Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1535X
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 54 1e-07
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 54 1e-07
10_04_0016 + 7601796-7601999,7602495-7602543,7603140-7603165,760... 30 1.6
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 29 2.1
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 29 2.1
07_03_1333 + 25861182-25861718 28 6.5
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 27 8.7
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2
Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
QT PP+IP+ ELFP G FPEG+I + D+ R TSEEKR L+RL K +Y +
Sbjct: 191 QTDPPSIPIDELFPSGDFPEGEIQQYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 243
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
R AAE HRQ RKH+R+ LKPGM MID+CE L
Sbjct: 244 RRAAEVHRQVRKHMRSILKPGMLMIDLCETL 274
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = +2
Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
QT PP+IPV ELFP G FPEG+I + D+ R TSEEKR L+RL K +Y +
Sbjct: 135 QTDPPSIPVDELFPSGEFPEGEIQHYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 187
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
R AAE HRQ RK++R+ LKPGM MID+CE L
Sbjct: 188 RRAAEVHRQVRKYMRSILKPGMLMIDLCETL 218
>10_04_0016 +
7601796-7601999,7602495-7602543,7603140-7603165,
7603334-7603339,7603496-7603570,7603880-7603933
Length = 137
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 560 SQLRMCFLVCLWASAACRFPDKYLYVIYQELFS 462
S L+ C ++CL A A + Y+Y +Y ++FS
Sbjct: 61 SDLKKCSMLCLHAIAYYKIHILYIYSVYMDVFS 93
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 416 EGIDERTAKNRFTSEEKRALDRLHKDIYQEIDMLLKPTGRQENTSAIG 559
+G+DE+ + + T+ + + D D+ ++ L+P R +TS IG
Sbjct: 249 QGVDEQPSSSPATTRQLQTADDDDDDLVAQLPPQLRPLARAASTSPIG 296
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 428 ERTAKNRFTSEEKRALDRLHKDIYQE 505
+RT K R+ SE+KR LDR HK++ ++
Sbjct: 60 KRTGKRRYPSEKKR-LDRRHKELLRK 84
>07_03_1333 + 25861182-25861718
Length = 178
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 416 EGIDERTAKNRFTSEEKRALDRLHKDIYQEID 511
E DE T +EK ALD+ KD E+D
Sbjct: 80 EYFDEHANNKADTDDEKAALDKFDKDFIGELD 111
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 410 PAEGIDERTAKNRFTSEEKRALDRLHKD-IYQEI--DMLLKPTGRQENTSAIGSSL 568
P +GI + + +R E R D + K + QEI DM+L T Q NTSA G+S+
Sbjct: 472 PVKGILDASTGHRIPQNESRE-DGIGKTMVNQEIISDMML--TNGQANTSACGTSM 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,852
Number of Sequences: 37544
Number of extensions: 182057
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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