Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1535X
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    56   2e-08
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    29   2.6  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    29   2.6  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    29   2.6  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    29   2.6  
Z81509-2|CAB04155.1|  239|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 21/31 (67%), Positives = 28/31 (90%)
 Frame = +1

Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
           R +AEAHRQ RK++++W+KPGMTMI+ICE L
Sbjct: 134 RRSAEAHRQVRKYVKSWIKPGMTMIEICERL 164



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +2

Query: 350 PVAELFPDGXFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQE 505
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK+ALD  +++++Q+
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQD 132


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 503 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESXHQEI 363
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 16  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 503 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESXHQEI 363
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 13  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 503 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESXHQEI 363
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 22  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 503 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESXHQEI 363
           P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


>Z81509-2|CAB04155.1|  239|Caenorhabditis elegans Hypothetical
           protein F21A3.4 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 425 DERTAKNRFTSEEKRALDRLHKDIYQEIDMLLKPTGRQ 538
           ++R +      EEKR +++  K + +E++MLLK TG++
Sbjct: 181 EQRKSLGERVEEEKR-MEQEQKKMLEELEMLLKKTGKK 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,095
Number of Sequences: 27780
Number of extensions: 163589
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)