Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1535X
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.3  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILC 453


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILC 521


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 132 FCVTFIDNLYIVIFSIFHYIFGNIIFC 52
           F    +D L +++F++F  +   +I C
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILC 521


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 422 IDERTAKNRFTSEEKR 469
           ++ERT++NR++   +R
Sbjct: 30  LEERTSRNRYSRSRER 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,473
Number of Sequences: 438
Number of extensions: 2229
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)