Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1535X
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 56 2e-08
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 56 2e-08
At2g44180.1 68415.m05496 methionyl aminopeptidase, putative / me... 54 6e-08
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil... 28 4.1
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy... 27 7.2
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 7.2
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 9.6
At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containi... 27 9.6
At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containi... 27 9.6
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = +2
Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
QT PP+IPV ELFP G FPEG+I ++ D+ R TSEEKR L+R K IY +
Sbjct: 78 QTDPPSIPVVELFPSGEFPEGEIQEYK-----DDNLW--RTTSEEKRELERFEKPIYNSV 130
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
R AAE HRQ RK++R+ +KPGM M DICE L
Sbjct: 131 RRAAEVHRQVRKYVRSIVKPGMLMTDICETL 161
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = +2
Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
QT PP+IPV ELFP G FPEG+I ++ D+ R TSEEKR L+R K IY +
Sbjct: 78 QTDPPSIPVVELFPSGEFPEGEIQEYK-----DDNLW--RTTSEEKRELERFEKPIYNSV 130
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
R AAE HRQ RK++R+ +KPGM M DICE L
Sbjct: 131 RRAAEVHRQVRKYVRSIVKPGMLMTDICETL 161
>At2g44180.1 68415.m05496 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to SP|P50579 Methionine aminopeptidase
2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam
profile PF00557: metallopeptidase family M24
Length = 441
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2
Query: 329 QTVPPTIPVAELFPDGXFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 508
QT PP+IPV ELFP G FP+G+I + D+ R TSEEKR ++RL K IY +
Sbjct: 80 QTDPPSIPVLELFPSGDFPQGEIQQYN-----DDNLW--RTTSEEKREMERLQKPIYNSL 132
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 508 RHAAEAHRQTRKHIRNWLKPGMTMIDICEEL 600
R AAE HRQ RK++R+ LKPGM MID+CE L
Sbjct: 133 RQAAEVHRQVRKYMRSILKPGMLMIDLCETL 163
>At1g26310.1 68414.m03209 MADS-box protein, putative strong
similarity to DNA-binding protein [Brassica rapa subsp.
pekinensis] GI:6469345, SP|Q41276 Floral homeotic
protein APETALA1 (MADS C) {Sinapis alba}; contains
InterPro accession IPR002100: Transcription factor,
MADS-box
Length = 255
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 431 RTAKNRFTSEEKRALDRLHKDIYQEIDMLLKPTGRQEN 544
R+ KN+ +E L R K+I +E ML K +EN
Sbjct: 142 RSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKEREN 179
>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450; supported by
cDNA: gi_13877668
Length = 495
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 135 IFCVTFIDNLYIVIFSIFHYIFGNIIFCYNCSHSSAEL 22
I T + +I+IFS+FH +F + NC A L
Sbjct: 4 IISFTIVSFFFIIIFSLFHLLFLQKLRYCNCEICHAYL 41
>At1g76780.1 68414.m08935 expressed protein ; expression supported
by MPSS
Length = 1871
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 386 EGQIMDHGPAEGIDERTAKNRFTSEEKRALDR 481
EG+I DHG E +++ K R T EKR DR
Sbjct: 715 EGEISDHGEVEDVEK--GKKR-TEAEKRIKDR 743
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 467 FSPHL*NDFLQFSHQYPQ-QDHGP*FDPQESXHQEIVP 357
F PH+ LQ SHQ PQ HG F P + + + P
Sbjct: 186 FRPHMQTQGLQNSHQTPQGGPHGQQF-PSQQEYNSLAP 222
>At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain; ESTs
gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
this gene
Length = 296
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 240 IISWRNAGEGDEKKKRRRIRVNLEKDLLRSRPSHLLYQ*RNYFLMXTFLRVKLWTMVL 413
+ +W N G+ EKKK + +N +++L P++ + + R L RVKL+ V+
Sbjct: 235 VTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRRDALKD---RVKLYKGVV 289
>At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain; ESTs
gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
this gene
Length = 301
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 240 IISWRNAGEGDEKKKRRRIRVNLEKDLLRSRPSHLLYQ*RNYFLMXTFLRVKLWTMVL 413
+ +W N G+ EKKK + +N +++L P++ + + R L RVKL+ V+
Sbjct: 240 VTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRRDALKD---RVKLYKGVV 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,017,095
Number of Sequences: 28952
Number of extensions: 149343
Number of successful extensions: 485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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