Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1534
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 100 2e-21
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853... 46 2e-05
12_01_0868 + 8277291-8277363,8280086-8280417 31 1.2
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 30 1.5
01_03_0003 + 11509530-11512772 29 3.6
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 29 4.7
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887... 28 8.3
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +1
Query: 511 FRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEI 690
FRLYK+ VLE LI SCVSKGYVFQMEMI+RA + Y I EVPI+FVDRV+G SKLGGSEI
Sbjct: 187 FRLYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEI 246
Query: 691 VQF 699
V++
Sbjct: 247 VEY 249
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/82 (51%), Positives = 65/82 (79%)
Frame = +1
Query: 25 RDKYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYG 204
R +YSI++PTYNER N+ +I++LI K+L + V++E+I++DDGSPDGT ++ +QLQ++YG
Sbjct: 9 RREYSIIVPTYNERLNVALIVYLIFKHLPD--VNFEIIVVDDGSPDGTQDIVKQLQQIYG 66
Query: 205 SSKIVLRPREMKLGLGTPTFMG 270
++++LR R KLGLGT G
Sbjct: 67 ENRVLLRARPRKLGLGTAYLHG 88
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 17/79 (21%)
Frame = +3
Query: 255 AYIHGIQQASGNFIIIMDADLSHHPKFIPEFI-----------------KLQLKYDYDIV 383
AY+HG++ ASG+F++IMDADLSHH I E + K Q + D+V
Sbjct: 84 AYLHGLKHASGDFVVIMDADLSHHMLEISETLEQSPLQLDSYQGYYTDKKKQKETGADVV 143
Query: 384 SGTRYKGSGGVYGWDFKRK 440
+GTRY +GGV+GW+ RK
Sbjct: 144 TGTRYVQNGGVHGWNLMRK 162
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +2
Query: 446 SRGANFLTQLMLRPGVSDLTGHLDCTKRKFSRSL 547
SRGAN L Q +L+PG SDLTG KR L
Sbjct: 165 SRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDL 198
>03_06_0489 -
34284301-34284336,34285104-34285227,34285307-34285371,
34285472-34285555,34285661-34285789,34285887-34285976,
34286116-34286250,34286939-34286984,34287119-34287225,
34287355-34287412,34287524-34287765
Length = 371
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Frame = +1
Query: 28 DKY-SILLPTYNERENLPIIIWLIIKYLDE-SGVD----YEVIIIDDGSPDGTSEVA 180
+KY S+++P YNE LP + + YL + S V+ YEV+I+DDGS D TS+VA
Sbjct: 111 EKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVA 167
>12_01_0868 + 8277291-8277363,8280086-8280417
Length = 134
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 148 DGSPDGTSEVARQLQKLYGSSKIV----LRPREMKLGLGTPTFMGYSKLLEILLL*WMR 312
+G+ +G E + L+ LY K + LR R+M GLG F+ +L +LL+ W R
Sbjct: 41 EGADEGMKEQMKSLKVLYERPKCIGGRRLRQRQMMSGLGDGQFVA---VLAMLLILWSR 96
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 294 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 422
+I D DL HH F P LQ + S Y G +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 382 SLVLVTRGVVESTAGTSSVSHI*GS*LFDSVNAETWS--FRSD-WPFRLYKKEVLEKLIL 552
+L + RG+VE +G + G L N ETW+ SD W K VL+ L +
Sbjct: 368 TLETIGRGIVEKCSGVPLTIRVIGGLLSSETNEETWNEILTSDIWNLTEGKNWVLDVLKV 427
Query: 553 SCV 561
S V
Sbjct: 428 SYV 430
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 243 WSRNAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDI 380
W ++H AS +I I D DL E+IKL KY +I
Sbjct: 197 WYAKRFLHPDIVASYEYIFIWDEDLGVEHFNAEEYIKLVKKYQLEI 242
>08_01_0900 +
8867895-8868938,8869887-8870085,8871500-8871713,
8871854-8871959,8872077-8872199
Length = 561
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 604 RQFDYSIGEVPISFVDRVYGESKLGGSEIVQF 699
+Q + IGE+P++FV + G S+L ++ QF
Sbjct: 487 KQIEPEIGEIPVAFVAKTEG-SELSEDDVKQF 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,915
Number of Sequences: 37544
Number of extensions: 359624
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -