Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1534
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20909| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   55   5e-08
SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)                 30   2.1  
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          28   8.4  

>SB_20909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score =  109 bits (263), Expect = 2e-24
 Identities = 50/61 (81%), Positives = 57/61 (93%)
 Frame = +1

Query: 517 LYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQ 696
           LYKK+VL+KL+ SCVSKGYVFQMEMI+RARQ  +SIGEVPI+FVDRVYGESKLGGSEI+ 
Sbjct: 2   LYKKDVLQKLVDSCVSKGYVFQMEMIVRARQLGFSIGEVPITFVDRVYGESKLGGSEIIH 61

Query: 697 F 699
           F
Sbjct: 62  F 62


>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 118 GVDYEVIIIDDGSPDGTSEVARQLQKLYGSSKI 216
           G DYE+IIIDDGSPDGT E A+QL+ +YG  KI
Sbjct: 238 GHDYEIIIIDDGSPDGTQEAAKQLEDIYGKDKI 270


>SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)
          Length = 779

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 505 WPFRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGE 630
           WP R++  E + K+I  CVS+   F + +   AR+  +  GE
Sbjct: 277 WPTRIFATESIRKIIAVCVSERAHFDLSL---ARELRHETGE 315


>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 302 YNNKISRSLLYPMN---VGVPRPSFISRGRSTILEE 204
           Y NKI++ +L   N   +G  RP F+S  +  ILE+
Sbjct: 11  YENKIAKKILQSRNCRPIGYVRPCFLSAAQLVILEK 46


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 437 TLEVPAVDSTTPLVTSTR 384
           TLE P +D+TTP+ T+TR
Sbjct: 429 TLEDPPIDTTTPIDTTTR 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,837,747
Number of Sequences: 59808
Number of extensions: 408247
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)