Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1534
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical ... 105 2e-23
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 40 0.002
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 29 4.3
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 29 4.3
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 29 4.3
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 28 5.6
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 5.6
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 5.6
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 5.6
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 28 7.4
>AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical
protein Y66H1A.2 protein.
Length = 239
Score = 105 bits (253), Expect = 2e-23
Identities = 52/82 (63%), Positives = 61/82 (74%)
Frame = +1
Query: 31 KYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 210
KYSI+LPTYNE+ENLPI IWLI YL E V +EVII+DD SPDGT +A+ LQK YG
Sbjct: 6 KYSIILPTYNEKENLPICIWLIENYLKE--VSHEVIIVDDASPDGTQGIAKLLQKEYGDD 63
Query: 211 KIVLRPREMKLGLGTPTFMGYS 276
KI+++PR KLGLGT G S
Sbjct: 64 KILIKPRVGKLGLGTAYSHGLS 85
Score = 100 bits (240), Expect = 9e-22
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = +3
Query: 255 AYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYGWDFK 434
AY HG+ A G FII+MDADLSHHPKFIPE I LQ KY DIV+GTRYK GGV GWD K
Sbjct: 79 AYSHGLSFARGEFIILMDADLSHHPKFIPEMIALQHKYKLDIVTGTRYKDGGGVSGWDLK 138
Query: 435 RKS 443
RK+
Sbjct: 139 RKT 141
Score = 94.3 bits (224), Expect = 8e-20
Identities = 43/63 (68%), Positives = 51/63 (80%)
Frame = +1
Query: 511 FRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEI 690
FRLYK+++L KLI VSKGYVFQMEM+ RA++ Y IGEVPISFVDR +GESKLG EI
Sbjct: 165 FRLYKRDILSKLIAESVSKGYVFQMEMMFRAKKSGYRIGEVPISFVDRFFGESKLGSQEI 224
Query: 691 VQF 699
V +
Sbjct: 225 VDY 227
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 443 ISRGANFLTQLMLRPGVSDLTGHLDCTKR 529
IS+GANFL Q +L PGVSDLTG KR
Sbjct: 142 ISKGANFLAQFLLNPGVSDLTGSFRLYKR 170
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +1
Query: 37 SILLPTYNERENLPIIIWLIIKYLD-----ESGVDYEVIIIDDGSPDGTSEVARQLQKLY 201
S+++P NE E + I++ YL+ + YE+I++DDGS D T+++ Q+
Sbjct: 84 SVIIPAMNEVERIEIMLDDCCDYLEARAEKDKDFTYEIIVVDDGSTDETADIVVQI---- 139
Query: 202 GSSKIVLRPREMKLGLG 252
G+ + LR +MK G
Sbjct: 140 GARRQNLRVLKMKANRG 156
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 LVSERLHSWDTA-SFWKFYYYNGCGFEPSSKVHS 340
L++ SWDT WK Y CG EPS V++
Sbjct: 252 LINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 LVSERLHSWDTA-SFWKFYYYNGCGFEPSSKVHS 340
L++ SWDT WK Y CG EPS V++
Sbjct: 252 LINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 LVSERLHSWDTA-SFWKFYYYNGCGFEPSSKVHS 340
L++ SWDT WK Y CG EPS V++
Sbjct: 252 LINFSRRSWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 61 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 192
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 498 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 541
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 61 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 192
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 61 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 192
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 764 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 807
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 61 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 192
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 604 RQFDYSIGEVPISFVDRVYGESKLGGSEIV 693
R+FD I E+PI F + +S++ S IV
Sbjct: 479 RKFDVDINEIPIRFEGPMVNKSRINTSRIV 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,265
Number of Sequences: 27780
Number of extensions: 313386
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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