Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1534
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.6  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 497 DLTGHLDCTKRKFSRSL 547
           +L GH++C   KF   L
Sbjct: 60  ELPGHINCDSSKFEEDL 76


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 EVIIIDDGSPDGTSEVARQLQKL 198
           + II+ D  P+G    A +LQK+
Sbjct: 98  KTIILSDKGPEGIQINATELQKI 120


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 EVIIIDDGSPDGTSEVARQLQKL 198
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 EVIIIDDGSPDGTSEVARQLQKL 198
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 EVIIIDDGSPDGTSEVARQLQKL 198
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,953
Number of Sequences: 438
Number of extensions: 4118
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)