Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1534
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20575.1 68414.m02567 dolichyl-phosphate beta-D-mannosyltrans...   175   3e-44
At2g39630.2 68415.m04859 glycosyl transferase family 2 protein s...    46   2e-05
At2g39630.1 68415.m04858 glycosyl transferase family 2 protein s...    46   2e-05
At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont...    30   1.3  
At5g06700.1 68418.m00757 expressed protein strong similarity to ...    27   9.1  
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer...    27   9.1  
At1g80240.1 68414.m09390 expressed protein contains Pfam profile...    27   9.1  

>At1g20575.1 68414.m02567 dolichyl-phosphate
           beta-D-mannosyltransferase, putative /
           dolichol-phosphate mannosyltransferase, putative /
           mannose-P-dolichol synthase, putative similar to DPM1
           from Homo sapiens [SP|O60762]; member of
           glycosyltransferase family 2
          Length = 246

 Score =  175 bits (425), Expect = 3e-44
 Identities = 104/229 (45%), Positives = 137/229 (59%), Gaps = 3/229 (1%)
 Frame = +1

Query: 22  KRDKYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLY 201
           K+ KYSI++PTYNER N+ II++LI K+L +  VD+E+I++DDGSPDGT E+ +QLQ+LY
Sbjct: 11  KKYKYSIIIPTYNERLNIAIIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEIVKQLQQLY 68

Query: 202 GSSKIVLRPREMKLGLGTPTFMGYSKLLEILLL*WMRI*AIIXXXXXXXXXXXXXMITIL 381
           G  +I+LR R  KLGLGT    G        ++  +    +              + T  
Sbjct: 69  GEDRILLRARAKKLGLGTAYIHGLKHATGDFVV--IMDADLSHHPKYLPSFIKKQLETNA 126

Query: 382 SLVLVTRGVV-ESTAGTSSVSHI*GS*LFDSVNAETWSFRSD--WPFRLYKKEVLEKLIL 552
           S+V  TR V      G + +  +             W   SD    FRLYKK  LE +I 
Sbjct: 127 SIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSALEDVIS 186

Query: 553 SCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQF 699
           SCVSKGYVFQMEMI+RA +  Y I EVPI+FVDRV+G SKLGGSEIV++
Sbjct: 187 SCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEY 235



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 38/62 (61%), Positives = 51/62 (82%)
 Frame = +3

Query: 255 AYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYGWDFK 434
           AYIHG++ A+G+F++IMDADLSHHPK++P FIK QL+ +  IV+GTRY   GGV+GW+  
Sbjct: 87  AYIHGLKHATGDFVVIMDADLSHHPKYLPSFIKKQLETNASIVTGTRYVKGGGVHGWNLM 146

Query: 435 RK 440
           RK
Sbjct: 147 RK 148



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +2

Query: 446 SRGANFLTQLMLRPGVSDLTGHLDCTKR 529
           SRGAN L Q +L PGVSDLTG     K+
Sbjct: 151 SRGANVLAQTLLWPGVSDLTGSFRLYKK 178


>At2g39630.2 68415.m04859 glycosyl transferase family 2 protein
           similar to dolichyl-phosphate beta-glucosyltransferase
           from Saccharomyces cerevisiae [SP|P40350]; contains Pfam
           glycosyltransferase group 2 domain PF00535
          Length = 236

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 28  DKY-SILLPTYNERENLPIIIWLIIKYLDE-----SGVDYEVIIIDDGSPDGTSEVARQL 189
           +KY S+++P YNE   LP  +   + YL +         +EV+I+DDGS DGT  VA   
Sbjct: 65  EKYLSLIVPAYNEELRLPAALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDF 124

Query: 190 QKLYGSSKIVLRPREMKLGLG 252
            + Y    I + P     G G
Sbjct: 125 IRKYTIDNIRVIPLGKNQGKG 145


>At2g39630.1 68415.m04858 glycosyl transferase family 2 protein
           similar to dolichyl-phosphate beta-glucosyltransferase
           from Saccharomyces cerevisiae [SP|P40350]; contains Pfam
           glycosyltransferase group 2 domain PF00535
          Length = 336

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 28  DKY-SILLPTYNERENLPIIIWLIIKYLDE-----SGVDYEVIIIDDGSPDGTSEVARQL 189
           +KY S+++P YNE   LP  +   + YL +         +EV+I+DDGS DGT  VA   
Sbjct: 65  EKYLSLIVPAYNEELRLPAALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDF 124

Query: 190 QKLYGSSKIVLRPREMKLGLG 252
            + Y    I + P     G G
Sbjct: 125 IRKYTIDNIRVIPLGKNQGKG 145


>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profiles PF01535: PPR repeat,
           PF03161 LAGLIDADG DNA endonuclease family
          Length = 547

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
 Frame = +1

Query: 1   EVDSGLIKRDKYSILLPTYNERENLPIIIWLIIKYLDESGVD------YEVIIIDDGSPD 162
           EVD G I   +  +    + E +   +++ L+  Y  E GV+       E++ +D G P 
Sbjct: 67  EVDIGRINSLREEMKKAGFQESKE--VVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPS 124

Query: 163 GTSEVARQLQKLYGS-SKIVLRPREMKLGLGTPTFMGYSKLLEIL 294
                  +     G  +K +   REM+  +G  T  GY K++E+L
Sbjct: 125 QAFVYKIEAYSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVL 169


>At1g60710.1 68414.m06834 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 13  GLIKRDKYSILLPTYNERENLPIIIW 90
           G +K D+YS ++PT+   E  P+  W
Sbjct: 317 GFVKGDRYSNMIPTFKNAETPPLSAW 342


>At5g06700.1 68418.m00757 expressed protein strong similarity to
           unknown protein (emb|CAB82953.1)
          Length = 608

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 255 RSETKLHLARSKHYFRGAIE 196
           + ETK++ AR +H+FRG  E
Sbjct: 348 KDETKVYEARGRHHFRGEAE 367


>At4g01970.1 68417.m00262 galactinol-raffinose
           galactosyltransferase, putative similar to
           galactinol-raffinose galactosyltransferase GI:6634701
           from [Vigna angularis]
          Length = 807

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 76  PIIIWLIIKYLDESGVDYEVIIIDDG 153
           P  IW  +K  ++ GV  + +IIDDG
Sbjct: 249 PATIWTGVKEFEDGGVCPKFVIIDDG 274


>At1g80240.1 68414.m09390 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 370

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
 Frame = +1

Query: 31  KYSILLPTYNERENLPIIIWLI-----IKYLDESGV----DYEVIIIDDGSPDGTSEVAR 183
           K+ +L+P + E +N P+  W+I     +KY+D++       +  I +  G     S++ R
Sbjct: 213 KWGVLIPPFIEDDNSPLPGWMIESLKAVKYVDKAHFAVPEGHRAIELVGGKESAISQIVR 272

Query: 184 -QLQKLY 201
             L K Y
Sbjct: 273 TSLNKFY 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,389
Number of Sequences: 28952
Number of extensions: 296252
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)