Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1533
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 42 6e-04
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 39 0.005
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 37 0.016
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 33 0.20
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 32 0.60
05_01_0053 + 378123-379115 32 0.60
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 31 1.1
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 31 1.4
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 31 1.4
03_04_0134 - 17593449-17594702 30 2.4
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 29 4.3
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 29 4.3
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 29 4.3
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 7.4
02_03_0085 + 15063444-15063889,15064324-15065311 28 7.4
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 28 7.4
07_03_0080 + 13193001-13193312 28 9.8
05_03_0314 + 12203589-12204675,12207915-12208861 28 9.8
05_03_0047 + 7793337-7793969 28 9.8
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +2
Query: 83 LKEHIETIHE-RALYVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICKSKFTRKI 259
+K+H H R +VC C K + +S H+ G G + C+ C F+RKI
Sbjct: 117 IKKHFRRKHGGRRQWVCARCAKGYAVQSDYKAHLKTCGTRG-----HSCD-CGRVFSRKI 170
Query: 260 I*SYIL--ELSTYIKVKNTFSASHVLLKLKTFLD 355
S L +++ Y+++K S S++ +K+++F++
Sbjct: 171 TRSLNLYSDIANYLRMKYIISLSNIAIKVESFIE 204
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 44 CTKCKVRCPNETVLKEHIETIHERALYVCP--ECNKEFVRRSHVTRHMTQSGCHGRQLNL 217
C +C LK+H+++ + ++CP +C ++R+ H+ RHM + Q L
Sbjct: 62 CQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLK-----HQGKL 116
Query: 218 YPCEI--CKSKFTRK 256
+ C + C KF+ K
Sbjct: 117 FTCSMDGCGRKFSIK 131
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 80 VLKEHIETIHERALYVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICKSKFTRK 256
+ K + E + + C EC F + +H+ +HM QS R + P E C + RK
Sbjct: 46 IYKSNGEKVVHEGDHTCQECGASFQKPAHLKQHM-QSHSDERSF-ICPLEDCPFSYIRK 102
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +1
Query: 286 HIHKSEKYFFCKS--CTFETKNFSRLVNHWHLKHSGTPNYYECYH--CGKSTSSRAAMAK 453
H+H +E+ + C+ C + + S+L H HL H+G ++ C H CGK+ S +
Sbjct: 109 HVH-NERQYICQEPGCGKKFVDSSKLKRH-HLIHTGQKDFI-CPHPGCGKAFSLDFNLRS 165
Query: 454 HLEIHGEKNY 483
HL+ H +NY
Sbjct: 166 HLKTHALENY 175
Score = 32.7 bits (71), Expect = 0.35
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 412 HCGKSTSSRAAMAKHLEIHGEKNYTCE 492
+CGK+ AA+ KH +H E+ Y C+
Sbjct: 93 NCGKTFVDVAALRKHAHVHNERQYICQ 119
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 83 LKEHIETIHERALYVC--PECNKEFVRRSHVTRH 178
L++H +H Y+C P C K+FV S + RH
Sbjct: 104 LRKHAH-VHNERQYICQEPGCGKKFVDSSKLKRH 136
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 415 CGKSTSSRAAMAKHLEIHGEKNYTC 489
CGK+ A+ KH +HGE+ Y C
Sbjct: 50 CGKTFVDAGALRKHAHVHGERQYVC 74
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Frame = +2
Query: 65 CPNETVLKEHIET---IHERALYVCPE--CNKEFVRRSHVTRHMTQ-----SGCHGRQLN 214
CP K+H+ H+ L+ CP CN++F + ++ RH+ + S C ++
Sbjct: 294 CPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPCESKKEF 353
Query: 215 LYPCEICKSKF 247
+ P E C F
Sbjct: 354 ICPEENCGKTF 364
>05_01_0053 + 378123-379115
Length = 330
Score = 31.9 bits (69), Expect = 0.60
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 779 RCRWSWISVCTTCYNACICEVYP 711
RCR + +C TC C+C+ YP
Sbjct: 64 RCRTKCLVLCPTCKTFCLCDFYP 86
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 313 FCKSCTFETKNFSRLVNHWHLKHSGTPNYYECYHCGKSTSSRAAMAKH-LEIHGE 474
FC C E + LV H KH ++C+ C K S+ MA H L++H E
Sbjct: 12 FCYYCDREFDDEKILVQHQKAKH------FKCHVCHKKLSTAGGMAIHVLQVHKE 60
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 364 HWHLKHSGTPNYYECYHCGKSTSSRAAMAKHLEIHGEKNYTCE 492
H+ KHSG + C C K+ + + HL+ G + +TC+
Sbjct: 132 HFRRKHSGH-RQWACSRCSKAYAVHSDYKAHLKTCGTRGHTCD 173
>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 156 LTNSLLHSGHTYKALSCIVSMCSFRTVSFG-HRTLHFVQATLLGNVEWFISM 4
L +SLL SG +A SC+ SM + F H + + LLG+VE +S+
Sbjct: 1063 LISSLLSSGRFSEATSCLNSMNKRELIGFDIHFDVLIKELCLLGDVEMSVSL 1114
>03_04_0134 - 17593449-17594702
Length = 417
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 400 YECYHCGKSTSSRAAMAKHLEIHGEKNYTCEVV 498
YEC+ CG++ S A+ H H N C +V
Sbjct: 279 YECHGCGRAFLSYQALGGHRASHKRINSNCSLV 311
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 364 HWHLKHSGTPNYYECYHCGKSTSSRAAMAKHLEIHGEKNYTCE 492
H+ KHSG + C C K+ + + HL+ G + ++C+
Sbjct: 133 HFRRKHSGH-RQWACARCSKAYAVHSDYKAHLKTCGTRGHSCD 174
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Frame = +2
Query: 32 NSVACTKCKVRCPNETVLKEH-IETIHERALYVCPECNKEFVRRSHVTRHMTQ------- 187
+S+ C+ CKV + L EH +H L NK + T+
Sbjct: 311 SSITCSLCKVTMTSPRALVEHRASLLHRSNLAPLRSGNKATTEAAQPAEKKTEKPEASEW 370
Query: 188 -SGCHGRQLNLYPCEICK 238
S H Q +Y C+IC+
Sbjct: 371 NSSAHHHQNRMYYCDICE 388
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 32 NSVACTKCKVRCPNETVLKEHI 97
N + C +CKVRC N + +H+
Sbjct: 332 NYLWCDRCKVRCDNNVTMADHL 353
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 400 YECYHCGKSTSSRAAMAKHLEIHGEKNYTC 489
YEC C K+ S+ A+ H+ H + +C
Sbjct: 463 YECSECHKTFSTHQALGGHVAAHKRQKKSC 492
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 29 PNSVACTKCKVRCPNETVLKEHIETIH 109
P + ACTKC CPN + + + H
Sbjct: 272 PPTPACTKCLTECPNNNLTWATVSSSH 298
>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 162 DRLTNSLLHSGHTYKALSCIVSMCSFRTVSFGHRTLHFVQATLLGNVEWFISM 4
D + N L G K L+ ++ C+++TVSF ++L F + + N F +M
Sbjct: 1061 DEIKNFALDLG---KKLNKVLGDCNYKTVSFDEKSLSFFPSCVQPNDSVFAAM 1110
>07_03_0080 + 13193001-13193312
Length = 103
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 394 NYYECYHCGKSTSSRAAMAKHLEIH 468
+YYEC C + ++ A+ H+ IH
Sbjct: 15 SYYECTFCKRGFTNAQALGGHMNIH 39
>05_03_0314 + 12203589-12204675,12207915-12208861
Length = 677
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 391 PNYYECYHCGKSTSSRAAMAKHLEIH 468
P Y C CG+ S A+ H+ +H
Sbjct: 421 PRSYSCSFCGREFRSAQALGGHMNVH 446
>05_03_0047 + 7793337-7793969
Length = 210
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 397 YYECYHCGKSTSSRAAMAKHLEIH 468
YYEC C + ++ A+ H+ IH
Sbjct: 46 YYECVFCKRGFTTAQALGGHMNIH 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,924
Number of Sequences: 37544
Number of extensions: 383805
Number of successful extensions: 1107
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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