Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1533
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 39 0.003
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 30 2.0
At5g14010.1 68418.m01638 zinc finger (C2H2 type) family protein ... 29 2.7
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 29 2.7
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 29 3.6
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 29 4.7
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ... 28 6.2
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ... 28 6.2
At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein ... 28 6.2
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 28 6.2
At4g01340.1 68417.m00174 CHP-rich zinc finger protein-related si... 28 8.2
At2g40475.1 68415.m04995 expressed protein 28 8.2
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ... 28 8.2
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 28 8.2
At2g02690.1 68415.m00208 hypothetical protein 28 8.2
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 28 8.2
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 28 8.2
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 286 HIHKSEKYFFC--KSCTFETKNFSRLVNHWHLKHSGTPNYYECYH-CGKSTSSRAAMAKH 456
HIH E+ + C + C + + S+L H+ L H+G NY Y CGK+ S + H
Sbjct: 101 HIH-GERQYVCDQEGCGKKFLDSSKLKRHY-LIHTGERNYICTYEGCGKAFSLDFNLRSH 158
Query: 457 LEIHGEKNY 483
++ H ++NY
Sbjct: 159 MKTHSQENY 167
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 415 CGKSTSSRAAMAKHLEIHGEKNYTCE 492
CGK+ +A+ KH IHGE+ Y C+
Sbjct: 86 CGKTFFDVSALRKHSHIHGERQYVCD 111
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 122 YVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICKSKFTRK 256
+ C EC EF + +H+ +HM QS R Y + C + + RK
Sbjct: 66 HTCQECGAEFKKPAHLKQHM-QSHSLERSFTCY-VDDCAASYRRK 108
>At5g14010.1 68418.m01638 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 161
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 158 RSHVTRHMTQSGCHGRQLNLYPCEICKSKF 247
RS RH S H L+PC+ C KF
Sbjct: 18 RSSSKRHSFSSSAHPASHRLFPCQYCPRKF 47
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Frame = +2
Query: 44 CTKCKVRCPNETVLKEHIETIHER---------ALYVCPECNKEF 151
C +C + + T L EH+E HER + VCP C++ F
Sbjct: 215 CPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGF 259
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 61 YFTFCASNTIR*CGVVHFYV 2
YF FC SN I+ CGV YV
Sbjct: 1196 YFKFCCSNRIKECGVRLLYV 1215
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 44 CTKCKVRCPNETVLKEH 94
C +C+ RCP +TVLKE+
Sbjct: 792 CPRCERRCPYKTVLKEN 808
>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
alpha-glucosidase GI:2648032 from [Solanum tuberosum]
Length = 921
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 187 KWLSWSSVKFVSL*NLQVKIHKEDNLIVHLRTQHIHKSEKYFFCKSCT 330
++ +W SV F +Q K+ + +V + HI + + YF K T
Sbjct: 407 RYFTWDSVLFPHPEEMQKKLAAKGRKMVTIVDPHIKRDDSYFLHKEAT 454
>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 215 NLTDDHDSHFVSYDE-LHEIVLQTLYCILDIHIRLFHVLSLC 93
+ T +H+ V+ D+ LH+I Q C+L I ++ +LC
Sbjct: 251 HFTHEHNLRLVNEDDILHDISKQCYGCVLPIFFNSCYICTLC 292
>At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 226
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 391 PNYYECYHCGKSTSSRAAMAKHLEIH 468
P Y C CG+ S A+ H+ +H
Sbjct: 52 PRSYSCSFCGREFKSAQALGGHMNVH 77
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 382 SGTPNYYECYHCGKSTSSRAAMAKHLEIHGEKNYTCE 492
S T N +EC C K SS A+ H H + T E
Sbjct: 41 SHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTVE 77
>At4g01340.1 68417.m00174 CHP-rich zinc finger protein-related
similar to A. thaliana CHP-rich zinc finger proteins
Length = 226
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 14 NHSTLPNSVACTKCKVRCPNETVLKEHIE 100
NH+T P C +C+ RC +LK+H E
Sbjct: 88 NHNTRP---LCIQCQSRCKVSVILKKHNE 113
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 707 VTDKPHKCKHCNRSYIQKSSSSDI 778
V +P KC C+RSY+++ +I
Sbjct: 128 VEHRPRKCYSCSRSYVKEDDEEEI 151
>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 711
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 89 EHIETIHERALYVCPECNKEFVRRSHVTRHMTQSGCH 199
+H+E +R Y CP CN EF R HV + H
Sbjct: 98 KHLEG--KRYYYFCPLCNLEFHRGCHVLPQQMKHPLH 132
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +2
Query: 26 LPNSVACTKCKVRCPNETVLKEHIETIHERALYVCPE-CNKEFVRRSHVTRH--MTQSGC 196
LP SV CT C + +E +R ++ E C K +++ HV + + S
Sbjct: 418 LPESVVCTACVFQICSE----PFYACARKRCDFIIHEKCAKLPLKKRHVCHNQPLELSPN 473
Query: 197 HGRQLNLYPCEICKSKFT 250
+G L L+ C IC+ FT
Sbjct: 474 YGTYL-LHRCSICRQLFT 490
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 29 PNSVACTKCKVRCPNETVLK 88
P+ C KCK+RCP T ++
Sbjct: 587 PSRPMCAKCKIRCPYPTYVE 606
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 313 FCKSCTFETKNFSRLVNHWHLKHSGTPNYYECYHCGKSTSSRAAMAKH-LEIHGE 474
+C C E + LV H KH ++C+ C K S+ + M H L++H E
Sbjct: 13 WCYYCDREFDDEKILVQHQKAKH------FKCHVCHKKLSTASGMVIHVLQVHKE 61
>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 444
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 14 NHSTLPNSVACTKCKVRCPNETVL 85
NH + P+ CT C+ RCP +TVL
Sbjct: 408 NHMSRPS---CTGCRKRCPYKTVL 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,232
Number of Sequences: 28952
Number of extensions: 332592
Number of successful extensions: 1015
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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