Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1532
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VNA1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_A7P0L8 Cluster: Chromosome chr19 scaffold_4, whole geno...    33   8.0  

>UniRef50_Q1VNA1 Cluster: Putative uncharacterized protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Putative
           uncharacterized protein - Psychroflexus torquis ATCC
           700755
          Length = 106

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
 Frame = +1

Query: 196 MYVQHIDRGRVLWLK--RHFS--NLQERVIKSLKFEKNILT--KKKLVSYFQW 336
           +YV+ ID+    ++   RH    NL+E +I SL   KN+ T  KKKL+ +F W
Sbjct: 43  LYVKTIDKDSKEYILPFRHSDTLNLEEHIIDSLWTPKNVYTHDKKKLLHFFDW 95


>UniRef50_A7P0L8 Cluster: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr19 scaffold_4, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 159

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 145 SSADSV-IKIKSILLFKRMYVQHIDRGRVLWLKRHFSNLQERVIKSLKFEKNILTK 309
           SSAD++ ++ K    FKR+ +Q     +++ +  H  N Q  + +SL   +N+L +
Sbjct: 74  SSADAIQVQAKEWTSFKRLLMQRFSSSKMVSIATHIRNHQVCIYRSLMIHRNLLKR 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,895,500
Number of Sequences: 1657284
Number of extensions: 13644588
Number of successful extensions: 24978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24940
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)