BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1532 (781 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 4.0 SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 5.3 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.0 SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 25 9.2 >SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 277 Score = 26.6 bits (56), Expect = 4.0 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 178 ILLFKRMYVQHIDRGRVLWLKRHFSNLQERVIKSLKFEKNILTKKKLVSYFQWS*FN*S- 354 I +F Y Q + L+ HF+ L E ++SLK N +T +V S N S Sbjct: 103 ITIFNFKYAQQEMQNEKLY---HFAKLLEPALESLKVTNNHITHATIVGQVSGSEHNLST 159 Query: 355 SIKNVELLM 381 +I+ V++++ Sbjct: 160 AIEQVDVIV 168 >SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharomyces pombe|chr 1|||Manual Length = 520 Score = 26.2 bits (55), Expect = 5.3 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +1 Query: 100 RNIEVNEIPSRYVVCSSADSVIKIKSILLFKRMY 201 R++ VN RY+V + ADS++K+ + +K ++ Sbjct: 269 RDLAVNR-DGRYMVTAGADSLLKVWDLRTYKELH 301 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 25.8 bits (54), Expect = 7.0 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 100 RNIEVNEIPSRYVVCSSADSVIKIKSILLFKRMYVQH 210 RN+E+ E+ S+Y ++ IK + + L K+ QH Sbjct: 1093 RNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQH 1129 >SPBC1703.03c |||armadillo repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 664 Score = 25.4 bits (53), Expect = 9.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 617 AGHAM*RIF*VIFLHLGLH*WSFSKD 540 AG + IF IFL LGL W FS + Sbjct: 477 AGKILQWIFQTIFLRLGLGVWPFSSE 502 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,117,873 Number of Sequences: 5004 Number of extensions: 65494 Number of successful extensions: 135 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 135 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 377352472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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