Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1532
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.0  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   5.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   7.0  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   9.2  

>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 178 ILLFKRMYVQHIDRGRVLWLKRHFSNLQERVIKSLKFEKNILTKKKLVSYFQWS*FN*S- 354
           I +F   Y Q   +   L+   HF+ L E  ++SLK   N +T   +V     S  N S 
Sbjct: 103 ITIFNFKYAQQEMQNEKLY---HFAKLLEPALESLKVTNNHITHATIVGQVSGSEHNLST 159

Query: 355 SIKNVELLM 381
           +I+ V++++
Sbjct: 160 AIEQVDVIV 168


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 100 RNIEVNEIPSRYVVCSSADSVIKIKSILLFKRMY 201
           R++ VN    RY+V + ADS++K+  +  +K ++
Sbjct: 269 RDLAVNR-DGRYMVTAGADSLLKVWDLRTYKELH 301


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 100  RNIEVNEIPSRYVVCSSADSVIKIKSILLFKRMYVQH 210
            RN+E+ E+ S+Y      ++ IK + + L K+   QH
Sbjct: 1093 RNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQH 1129


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 617 AGHAM*RIF*VIFLHLGLH*WSFSKD 540
           AG  +  IF  IFL LGL  W FS +
Sbjct: 477 AGKILQWIFQTIFLRLGLGVWPFSSE 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,873
Number of Sequences: 5004
Number of extensions: 65494
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)