Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1532
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580...    29   4.1  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    28   7.2  
03_02_0403 + 8160664-8163690                                           28   9.6  

>08_01_0673 -
           5805218-5805349,5805936-5806026,5806416-5806471,
           5806571-5806852,5806924-5807057,5807088-5807163,
           5807247-5807747,5808454-5809037,5809579-5809597
          Length = 624

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 76  LQYAIYLSRNIEVNEIPSRYVVCSSADSVIKIKSILL 186
           L Y     RN++VN+   R  VC++ D+++K+   ++
Sbjct: 97  LVYCFVKHRNLDVNDDDDREPVCTAQDALLKVHDAIV 133


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +1

Query: 235 LKRHFSNLQERVIKSLKFEK 294
           LKRH ++L+ER+++S+ +EK
Sbjct: 592 LKRHLNSLEERLLESMAWEK 611


>03_02_0403 + 8160664-8163690
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 124 PSRYVVCSSADSVIKIKSILLFKRMYV 204
           PSR ++CS A SV+K +++L+    Y+
Sbjct: 659 PSRGILCSHALSVLKQENVLMLPSKYI 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,637,610
Number of Sequences: 37544
Number of extensions: 327419
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)