Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1532
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  29   3.2  
SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      29   5.6  
SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)                   28   7.4  
SB_44744| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82)                      28   7.4  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_17533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = -3

Query: 263 SCKLLKCRFNQRTLPLSICCTY--IRLNNKILFIFITLSALL---HTT*REGISFTSIFL 99
           S  L +C    R++ L  C T+  I L+ ++ F  ITL   +     T  E ++F SI L
Sbjct: 48  SITLHEC-VTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITL 106

Query: 98  ER*IAYWRQSLFTCV 54
              + +W  +L  CV
Sbjct: 107 HECVTFWSITLHECV 121


>SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 413 ICLYV--CIE*APKLLNRFEKFFHCLEATLFPGTRL 514
           +C++V  C+E  P L   +  FFH  +A  FP +RL
Sbjct: 146 VCVWVLTCVEPIPYLSLGYRYFFHPAKAFCFPDSRL 181


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 136 VVCSSADSVIKIKSILLFKRMYVQHIDRGRVLWLKRHFSNLQERVIKSLKFEKNILTKKK 315
           VVC SA S I +++ ++FK++ V    +  V  +    S +   ++  +   K I  K K
Sbjct: 522 VVCPSAKSTIDVQNYVVFKQIPVNVQPKNGVKSMLAFPSEIDVVLVPKIPAIKTIRYKVK 581

Query: 316 LVSY 327
           L+ Y
Sbjct: 582 LLGY 585


>SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)
          Length = 276

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 284 FKLLMTLSCKL--LKCRFNQRTLPLSICCTY 198
           F  +  L C+L  L C  NQR L L  CC Y
Sbjct: 148 FPEVTDLFCRLPYLHCSINQRLLTLETCCGY 178


>SB_44744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 284 FKLLMTLSCKL--LKCRFNQRTLPLSICCTY 198
           F  +  L C+L  L C  NQR L L  CC Y
Sbjct: 44  FPEVTDLFCRLPLLHCSINQRLLTLETCCGY 74


>SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82)
          Length = 335

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 254 LLKCRFNQRTLPLSICCTYIRLNNKILFIFITLSALLHTT*REGISFTSIFLE 96
           L+ C  +Q+ LPLS+C T I ++   LF  +T       T    +SF S+FL+
Sbjct: 107 LILCLLSQKLLPLSLCLTAIIVDT--LFAILTFVIWYRIT--PNVSF-SVFLK 154


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 172 LFLSHCLHYYILHSVKVFHSPQYFLK 95
           +++SH L YYILH +   H+  Y+ +
Sbjct: 847 VYISHTLRYYILHDID--HTKPYYFR 870


>SB_17533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 648 TLFYSIMNSFRRARDVKNILGDFFTPWVTL 559
           +LFY+I    R   +VKN L D FTP  +L
Sbjct: 9   SLFYNISYQNRGNNEVKNTLTDNFTPRASL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,998,435
Number of Sequences: 59808
Number of extensions: 436900
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)