Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.64 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.9  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 187 LHIFKTNYCVLCGASHCKYLLAVILNILFTRIL*LQLIYYTFTKLI 50
           LH+  T Y +L    +  YL  ++L + +  +  ++L+Y   T L+
Sbjct: 280 LHLVVTPYYLLIEVCNAGYLPFILLQVAWIVLHLIRLMYQVTTNLV 325


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 87  YKILVNKIFKITANKY 134
           +K+L +KI+K+   KY
Sbjct: 209 FKLLTSKIYKVLEEKY 224


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 718 SRLSCSDLSAMGY*NSPILS 659
           SRL  S L A GY +SP LS
Sbjct: 93  SRLEKSPLLANGYNHSPHLS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,018
Number of Sequences: 336
Number of extensions: 3516
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)