Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    30   0.40 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    28   1.6  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     27   2.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.0  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   6.6  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 562 SHNNYLYSSARCHQLLHK*SNLLGVDGDIKSFETKLASFNIPLHLNR 702
           S +N LY+ A CH L +    L+G   DIK F+    S++    LN+
Sbjct: 662 SPSNLLYTMATCHMLRYVDGELVGDPLDIKMFKFTHWSYSEENFLNK 708


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 584 HLQDVTNFCTNDQIFWELMVISKVSRQNWRVSISHCT 694
           + QD+ NF    ++ W+L   + ++  N R S+S  +
Sbjct: 389 YAQDLANFMDRQRVLWQLRYTNDLASTNKRFSLSEAS 425


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 95  DFIITINLLHIYKTYLVIVIFTKNMIKFL 9
           DFI+ I   + Y TYL   +F +N  K++
Sbjct: 72  DFIMNIYFFYQYSTYLENFVFARNAKKYI 100


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 187 LHIFKTNYCVLCGASHCKYLLAVILNILFTRIL*LQLIYY 68
           LH+  + +   C  S C Y L+++ NI     L L   YY
Sbjct: 41  LHLMTSQHIFKC-LSSCNYALSILHNICLASFLYLSKCYY 79


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +1

Query: 301 DMQGNI-DRIKKNYKFD 348
           D+QG I DR+KK Y+FD
Sbjct: 412 DIQGTILDRVKKGYQFD 428


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 516 FTKAYEGSVKKYHSWVTQQLFIFICK 593
           F  AY G V     W T +L  F+CK
Sbjct: 101 FNPAYLGIVNSGTQWSTDELRYFLCK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,826
Number of Sequences: 5004
Number of extensions: 55403
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)