Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    34   0.14 
05_06_0232 + 26596478-26596480,26596492-26596574,26596813-265969...    28   6.9  

>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
 Frame = +1

Query: 259 LVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKA----PVTEGV 420
           +++++G   A ++ D+Q NI+R+++ Y  D +    L  ++ +E++ G A         +
Sbjct: 97  VLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAI 156

Query: 421 LWLNRALLF 447
           LWL R++ F
Sbjct: 157 LWLTRSMDF 165


>05_06_0232 +
           26596478-26596480,26596492-26596574,26596813-26596934,
           26597447-26597611,26597816-26597909,26598001-26598208
          Length = 224

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 591 KMSPTFAQMIKSFGS*W*YQKFRDKIGEFQYPIALKSLQDR 713
           ++   F Q IK  G    Y   R++ GEF+Y +  +SL+DR
Sbjct: 103 RLGKNFMQRIKKDG----YIDVRNRKGEFEYQVTEESLKDR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,268,468
Number of Sequences: 37544
Number of extensions: 293703
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)