Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)                  44   1e-04
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)                    33   0.33 
SB_45509| Best HMM Match : PX (HMM E-Value=0.063)                      28   7.0  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             28   9.2  
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   9.2  

>SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)
          Length = 333

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
 Frame = +1

Query: 277 TAFAPVKFDMQGNIDRIKKNYKFDENS--CLLMLMLEEINN----GKAPVTEGVLWLNRA 438
           TAFAPVK D+ G+I +I   +  D  +   L  ++ +E+ +     K   T+ +LWL RA
Sbjct: 4   TAFAPVKMDIGGDIRKISSKFDTDPKAFYTLQNIVYQELKSNTCTAKNSATDALLWLKRA 63

Query: 439 LLFFELVFVDILENLQ 486
           L F ++   ++++  Q
Sbjct: 64  LEFMQIFLAEVVKGRQ 79



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 525 AYEGSVKKYHSWVTQQLF 578
           AYE +++KYH WV + +F
Sbjct: 88  AYEKTLRKYHGWVVRGVF 105


>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
          Length = 389

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 519 TKAYEGSVKKYHSWVTQQLFIFICKMSPTFAQMIKSFG 632
           TKAYE ++KKYH ++ + +F    K  P     +K+ G
Sbjct: 175 TKAYEKTLKKYHGFLVRGVFSLAMKAVPYRKDFMKALG 212


>SB_45509| Best HMM Match : PX (HMM E-Value=0.063)
          Length = 556

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 489 KKGDKYEYVFTKAY-EGSVKKYHSWVTQQLFIFICKMSPTFAQMIKSFGS*W 641
           K+ D YEYV   ++ + + +K H    +++F F CK+   +   +   G  W
Sbjct: 251 KRKDAYEYVIEVSWSDNTTEKVHR-CYEEMFDFQCKLRKMYPTKVDENGQPW 301


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 205 YNRRERLHIFKTNYCVLCGASHCKY--LLAVILNILFTRI 92
           + R+E+L+ F TN    C AS   Y  +L +++NI+   +
Sbjct: 163 FGRKEKLYEFLTNTKSSCAASMFSYFFVLVIVVNIIMINV 202


>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 511

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +1

Query: 295 KFDMQGNIDRIKKNYKFDENSCLLMLMLEEINNGKAPVTEGVLWLNRALLFFELVFVDIL 474
           K D++    +I ++YK DE+  LL+    +  +G   V E +   + +L F    F+ +L
Sbjct: 432 KLDLKYRFMKIGRHYKMDEDRLLLLKQHNDTKSGAEGVLEWIFSSHPSLHFSG--FIKVL 489

Query: 475 ENLQAKKEINMNMYSPKHMK 534
             L      N  M   +++K
Sbjct: 490 GELDMNDVAN-EMLKEEYVK 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,384
Number of Sequences: 59808
Number of extensions: 366118
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)