Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical...    49   3e-06
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    41   8e-04
AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   6.1  

>AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14a protein.
          Length = 231

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
 Frame = +1

Query: 226 ELLGSCNGFGYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NN 393
           + L +C G    V  LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + 
Sbjct: 45  QFLSACQGIADFVSFLGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHG 104

Query: 394 GKAPV-TEGVLWLNRALLF 447
           GK  + TEG+LWL R L F
Sbjct: 105 GKFGIATEGLLWLKRGLQF 123


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = +1

Query: 271 LGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NNGKAPV-TEGVLWLNR 435
           LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + GK  + TEG+LWL R
Sbjct: 133 LGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHGGKFGIATEGLLWLKR 192

Query: 436 ALLF 447
            L F
Sbjct: 193 GLQF 196


>AL031620-5|CAA20926.1|  277|Caenorhabditis elegans Hypothetical
           protein C18B12.5 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 235 GSCNGFGYLVERLGTAFAPVKF-----DMQGNIDRIKKNYKFDENSC 360
           G C  F + V+R+G  F   +F      ++ +I+R   NY+  EN C
Sbjct: 3   GMCRNFKFAVDRIGFKFDGAQFTVTDSSVKLDIERFLINYETRENHC 49


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 587 LQDVTNFCTNDQIFWELMVISKVSRQNWRVSISHCT*IAAR*TTFF 724
           +Q+V  +CTND I  ++MV +K+   N  V+       A R  T F
Sbjct: 106 MQEVDTYCTNDNII-KMMVANKIDMPNRVVTREEGLKFAKRHRTLF 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,433
Number of Sequences: 27780
Number of extensions: 304868
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)