Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1530
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33470.2 68415.m04103 glycolipid transfer protein-related sim...    47   1e-05
At2g33470.1 68415.m04102 glycolipid transfer protein-related sim...    47   1e-05
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   4.3  
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    28   5.7  
At2g26980.4 68415.m03240 CBL-interacting protein kinase 3 (CIPK3...    28   7.6  
At2g26980.1 68415.m03239 CBL-interacting protein kinase 3 (CIPK3...    28   7.6  

>At2g33470.2 68415.m04103 glycolipid transfer protein-related
           similar to phosphoinositol 4-phosphate adaptor protein-2
           (GI:14165198) [Homo sapiens]; similar to Glycolipid
           transfer protein (GLTP) (Swiss-Prot:Q9JL62) [Mus
           musculus]; similar to Glycolipid transfer protein (GLTP)
           (Swiss-Prot:Q9NZD2) [Homo sapiens]
          Length = 202

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
 Frame = +1

Query: 259 LVERLGTAFAPVKFDMQGNIDRIKKNY-----KFDENSCLLMLMLE-EINNGKAPVTEGV 420
           ++++ G A   VK D+ GNI R++KNY     KF      + + +E +I  G +  T G+
Sbjct: 38  VIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKIAKGSSSCTNGL 97

Query: 421 LWLNRALLFFELVFVDILENLQAKKEINM 507
           LWL RA+ F     V++  NL A ++ +M
Sbjct: 98  LWLTRAMDF----LVELFRNLVAHQDWSM 122



 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 525 AYEGSVKKYHSWVTQQLFIFICKMSP 602
           +Y+ ++KK+H W+    F    K++P
Sbjct: 129 SYQKTLKKWHGWLASSTFSMALKLAP 154


>At2g33470.1 68415.m04102 glycolipid transfer protein-related
           similar to phosphoinositol 4-phosphate adaptor protein-2
           (GI:14165198) [Homo sapiens]; similar to Glycolipid
           transfer protein (GLTP) (Swiss-Prot:Q9JL62) [Mus
           musculus]; similar to Glycolipid transfer protein (GLTP)
           (Swiss-Prot:Q9NZD2) [Homo sapiens]
          Length = 202

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
 Frame = +1

Query: 259 LVERLGTAFAPVKFDMQGNIDRIKKNY-----KFDENSCLLMLMLE-EINNGKAPVTEGV 420
           ++++ G A   VK D+ GNI R++KNY     KF      + + +E +I  G +  T G+
Sbjct: 38  VIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKIAKGSSSCTNGL 97

Query: 421 LWLNRALLFFELVFVDILENLQAKKEINM 507
           LWL RA+ F     V++  NL A ++ +M
Sbjct: 98  LWLTRAMDF----LVELFRNLVAHQDWSM 122



 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 525 AYEGSVKKYHSWVTQQLFIFICKMSP 602
           +Y+ ++KK+H W+    F    K++P
Sbjct: 129 SYQKTLKKWHGWLASSTFSMALKLAP 154


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 563  DPTVILLYRTFICFGEYIFIFI 498
            DPT++L+  T + FG  +FIF+
Sbjct: 985  DPTLLLIVYTALAFGSSVFIFV 1006


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +1

Query: 289 PVKFDMQGNIDRIKK----NYKFDEN-SCLLMLMLEEINNGKAPVTE 414
           PVKF   GNID++ K    N K DEN   +L + L +    KA V E
Sbjct: 45  PVKFSSAGNIDQVLKQNRGNCKIDENDDTILPIALGKKIADKAHVRE 91


>At2g26980.4 68415.m03240 CBL-interacting protein kinase 3 (CIPK3)
           identical to CBL-interacting protein kinase 3
           [Arabidopsis thaliana] gi|9280638|gb|AAF86507
          Length = 382

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 247 GFGYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENS 357
           G   ++E++  A  P+ FD+Q      KKNYK  ENS
Sbjct: 347 GANEIIEKIEEAAKPLGFDVQ------KKNYKVSENS 377


>At2g26980.1 68415.m03239 CBL-interacting protein kinase 3 (CIPK3)
           identical to CBL-interacting protein kinase 3
           [Arabidopsis thaliana] gi|9280638|gb|AAF86507
          Length = 382

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 247 GFGYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENS 357
           G   ++E++  A  P+ FD+Q      KKNYK  ENS
Sbjct: 347 GANEIIEKIEEAAKPLGFDVQ------KKNYKVSENS 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,473
Number of Sequences: 28952
Number of extensions: 266152
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)