Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1529X
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 29 0.25
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 1.8
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 5.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 5.4
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 5.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 5.4
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 5.4
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 24 7.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 7.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.4
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 29.1 bits (62), Expect = 0.25
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 90 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKSIAEESDKK 236
LSE AA R + LEN T +E ++ A L+ SQ KS A+ES K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 102 SQAADESE----RIRKALENRTNMEDDRVAILEAQLSQAKSIAEE 224
S DES+ +R+AL+++TN D ILE + KS+ ++
Sbjct: 1027 SNVTDESQLMLKTLREALQSKTNNIDHLSTILERNRKEYKSLLDD 1071
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 207 SPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 103
SP + PP + + HPP + AP + R+ PG
Sbjct: 146 SPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 156 NMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRLTW 281
N D RV LE +LSQA +E + +++ S LTW
Sbjct: 436 NQYDARVRTLENELSQAGVNLQEQIHQNDDLIESLKNQILTW 477
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 5.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 126 ARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLR 1
AR H RP R + R + + A G PP+ + SG R
Sbjct: 82 ARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKR 123
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 5.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 120 SERIRKALENRTNMEDDRVAILEA----QLSQAKSIAEESDKKYEEVARSWPWLRLTWSA 287
++R+++A E + + V LEA + ++ + K + A PWL+ W A
Sbjct: 99 NKRVQEAQEKADKISVEYVDDLEATETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDA 158
Query: 288 PRSV 299
R+V
Sbjct: 159 YRTV 162
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 5.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 93 SEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKSIAEESD 230
+EASQ E + + LE +N ++R+A LEAQL S E D
Sbjct: 199 NEASQRRFEFKTTIECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDD 248
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 7.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 102 SQAADESERIRKALENRTNMEDDRVAILEA-QLSQAKSIAEESDKKYEEVARSWPWL 269
SQ DES + K L + I +S+A + E+S K+ + +W WL
Sbjct: 278 SQNQDESSEVVKELNGIDPFVEAMNLIKNGGSISKAAVLLEQSVKENPQHFEAWKWL 334
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 253 RATSSYFLSDSSAMDFACDS*ASKMATRSSS 161
R +SSYF++ SS+ + S +S + SSS
Sbjct: 140 RTSSSYFITSSSSTPSSSSSSSSSSPSSSSS 170
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 171 RVAILEAQLSQAKSIAEESDKKYEEVARS 257
R+ L +L KSI+ +KK+EE S
Sbjct: 671 RLEQLTNELESLKSISRNKEKKFEEAISS 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,072
Number of Sequences: 5004
Number of extensions: 20162
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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