Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1529X
(384 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 66 9e-12
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07) 37 0.005
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.14
SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75) 30 0.56
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072) 30 0.56
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 1.3
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 29 1.3
SB_44052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 1.7
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 28 2.3
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 28 3.0
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098) 28 3.0
SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 27 4.0
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 27 4.0
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 27 4.0
SB_9622| Best HMM Match : PAPA-1 (HMM E-Value=5.8) 27 4.0
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 27 4.0
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 4.0
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 27 4.0
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4) 27 5.2
SB_59609| Best HMM Match : Tektin (HMM E-Value=0) 27 5.2
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 27 6.9
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16) 27 6.9
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 27 6.9
SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 26 9.2
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_59301| Best HMM Match : gpW (HMM E-Value=8.4) 26 9.2
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_42138| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 66.1 bits (154), Expect = 9e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 3 EVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAI 182
EVAAL +++Q A +L+EA + ADESER RK LENR +++R+A
Sbjct: 42 EVAALTKQLQQLEDDLDAAESKLADTQGQLTEAEKQADESERARKVLENRGASDEERLAS 101
Query: 183 LEAQLSQAKSIAEESDKKYEEVA 251
LE Q + A EE++K+YEE++
Sbjct: 102 LERQYNDALERTEEAEKQYEEIS 124
Score = 34.7 bits (76), Expect = 0.026
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +2
Query: 317 KIVELEEELRVVGNNLKSLEVS 382
++ ELEEE+ +VGNNL+SLE+S
Sbjct: 147 RVKELEEEVTLVGNNLRSLEIS 168
>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
Length = 245
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 81 TAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
TAK SEA D+SE+ RKA+E + D++A+LE + + + +E + + EE
Sbjct: 72 TAKESEA----DDSEKDRKAMEGKEYDHSDQIALLETRCADMMRLVDEKEIRLEE 122
>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 87 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
KL++ D E +RK LE+ D+++ LEA+L + + +E+ K E R
Sbjct: 72 KLADLKDRTDTHEEVRKELEDYEMEGDEKLLDLEAKLKEVERQEKETLDKLHEAQR 127
>SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)
Length = 159
Score = 30.3 bits (65), Expect = 0.56
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 225 TPRRWTSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGWPR 94
+P +W + PP+W+RD PP W +P + R P W R
Sbjct: 68 SPPQWK--LDSSPPQWKRDSSPPQWKRDSSPPQWKRDSSPPQWKR 110
Score = 29.9 bits (64), Expect = 0.74
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 225 TPRRWTSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGW 100
+P +W T PP+W+RD PP W +P + R P W
Sbjct: 32 SPPQWKREST--PPQWKRDSSPPQWKRDSSPPQWKRDSSPPQW 72
Score = 29.9 bits (64), Expect = 0.74
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 225 TPRRWTSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGW--PRTAWRW-RSRDAPR 58
+P +W + PP+W+RD PP W +P + R P W T +W R P+
Sbjct: 95 SPPQWKRDSS--PPQWKRDSSPPQWKQDLSPPQWKRESTPPQWKLESTPPQWKRDSSPPQ 152
Query: 57 TSRG 46
RG
Sbjct: 153 WKRG 156
>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
Length = 416
Score = 30.3 bits (65), Expect = 0.56
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 IRKALENRTNMEDDRVAILEAQLSQAKSIAEESDK-KYEEVARSW 260
+ + L DRV LEA+L Q K+ +EE K + +E+ W
Sbjct: 349 VEEELREELKQTKDRVVTLEAELEQLKAKSEERVKSQVDEIENKW 393
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 5 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHG 163
+G P PT G + VRGA + + + G PG + R T G P G
Sbjct: 155 TGQTGPRGPTGPPGLQGVRGAPGNEGARGLPGNPGLKGKRGATGSRGSPGNQG 207
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 78 ATAKLSEAS----QAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
A KL E S +A +ES +L+ N +DD + ++A L +A+ +E ++ EE
Sbjct: 1257 AETKLEEMSTNNVKAVEESNEKITSLKALINQKDDALEKIKASLKEAEERFQELNRTLEE 1316
Query: 246 VAR 254
V +
Sbjct: 1317 VQK 1319
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 105 QAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARS 257
+A+DE E IRK + N + D + L + QA+ EE + +E+ +S
Sbjct: 1096 EASDEIENIRKEMANAVSQRDLKNESLRNRAEQAEKELEEVFGREQELLQS 1146
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 96 EASQAADESERIRKALEN----RTNMEDDRVAILEAQLSQAKSIAEESDKKYEEV 248
E +A DE +R++ ++ R E+D +A E +L + + E+ K+Y+E+
Sbjct: 442 ERQRAEDERQRVKHEMQRLKDERRRAEEDEIARQEEELRRLQEQREKELKRYKEL 496
>SB_44052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 243 LRISCPTPRRWTSPVTVEPPRWQRDHPPCW--CGSPAPCVFARIHRRPGWPRTAWRWRSR 70
L P P+ T + + P + P PAP F+ +H R PR W+ R
Sbjct: 128 LEAPAPKPKDTTKAIDLAPSEYICGDTPRRPSAARPAPSSFSFLHERMESPRPTWKRRHT 187
Query: 69 D 67
D
Sbjct: 188 D 188
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 29.1 bits (62), Expect = 1.3
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Frame = -1
Query: 228 PTPRRWTSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRP------GWPRTAWRWRSRD 67
PTP + P T PP HP P+P H P G+P T +
Sbjct: 582 PTPS-YPQPGTYPPP-----HPSGGYPQPSPPHGGHPHHPPPTGYPGGYPGTHTAPPAGG 635
Query: 66 APRTSRGPPPAVGYVGSGQP 7
P PPP GY G G P
Sbjct: 636 YPTGQHPPPPPAGYPGYGPP 655
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 84 AKLSEASQAADESERIRKALENRTNME-DDRVAILEAQLSQAKSIAEE 224
AKLSE A++ E+ KALE+R+ E + V + E++L+ E+
Sbjct: 471 AKLSEKETLANDLEQKLKALEDRSITEKSEAVLLFESKLATLNKTIED 518
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 108 AADESERIRKAL--ENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVA 251
AA E ER+R++L EN R ++ + QLSQ ++ + +K +++A
Sbjct: 550 AAAERERLRESLSVENSVRSNLGRQSLAQVQLSQVDTLRDPRLQKVQKIA 599
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 120 SERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVA 251
S+ RK ++ T+ +++ LE L AKS+ E DK+ +E+A
Sbjct: 783 SKEKRKVIKTLTSSKEEGTT-LEGDLQVAKSVVLEEDKERDEMA 825
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +3
Query: 90 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
L+++ D E +RK + R N ++A L+ +L++A+S +D+K ++
Sbjct: 1724 LAKSGNKDDLLENLRKRNKQRENELQKQIADLQRKLNEAESKIRTADEKVQD 1775
>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 LSEASQAADESERI--RKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
L E + DE R RK LE+ ED++ E + S IAEE +K E+ R
Sbjct: 1199 LEEERRREDERRREEDRKRLEDLKRFEDEKRRAEEEKKSAELRIAEEVRRKAEQARR 1255
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 132 RKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
R LEN N + D + L A+L EE +YEE
Sbjct: 214 RDELENTVNKKQDEIEALNAKLEILTREVEEERHRYEE 251
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -2
Query: 350 RHGAPPQA--QRFWIHRTRHAPRRAPSQPQP 264
RH PP QR W+ +RH P Q QP
Sbjct: 942 RHAPPPPTLTQRAWVPGSRHTADCIPGQVQP 972
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 93 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
SEA + E R+ L N+ ED+ A L AQ++ A E D+ EEV +
Sbjct: 573 SEADKLHGEVLRLNDILYNKELAEDEERAQLAAQVTSA---TREKDEALEEVEK 623
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 87 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARS 257
+LSE Q E + L +N + + EAQL +S E +KK E+ S
Sbjct: 537 RLSEQLQRRTNLEEQKAELIANSNTYEREITDAEAQLKPIESELREEEKKKAEIVNS 593
>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
Length = 1028
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 249 QPLRISCPTPRRWTSPVTVEPPRWQRDHPPCW 154
+P + CP PR++ + PP W+ + PCW
Sbjct: 976 EPFKSYCPYPRKFDW-MYFAPP-WRHEPSPCW 1005
>SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -2
Query: 350 RHGAPPQA--QRFWIHRTRHAPRRAPSQPQP 264
RH PP QR W+ +RH P Q QP
Sbjct: 53 RHAPPPPTLTQRAWVPGSRHTADCIPGQVQP 83
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 84 AKLS-EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSW 260
AKLS + + DE + ++++L + + + LEA L E S++KYE++ SW
Sbjct: 121 AKLSAKYEELEDEKDEMQESLSDTIREKSREIRDLEADL-------EMSEQKYEDLKSSW 173
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 78 ATAKLSEASQAADESERIRK--ALENRTNMEDDRVAILEAQLSQAKSIAEESD 230
ATA++S A +S++IR+ A E+ EDDR E Q S +K+ ESD
Sbjct: 805 ATARVSVHHACATDSKKIRQGNASEDDPTPEDDRRNSSETQDSTSKN-RRESD 856
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 87 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
K E S + ER+ LE +E D + +++L+ K+ E + +++EEV +
Sbjct: 1757 KQMEFSAKQRKLERLGVELEEALELEKDALCRCQSELANCKNELEIAKQQHEEVIK 1812
>SB_9622| Best HMM Match : PAPA-1 (HMM E-Value=5.8)
Length = 281
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 44 GPREVRGASRDRHRQAVRGQPGRR*IRANTQGA 142
G EVR A RDR Q +PGR+ AN Q +
Sbjct: 113 GGEEVREAIRDRSSQPDYRRPGRQLSEANDQAS 145
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +3
Query: 105 QAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARS 257
Q + ER+ + + +++R+A+LE L+++ +IA E ++ + A S
Sbjct: 486 QGNEHDERVDE-IRKELKTKEERIAVLEEALTESVTIAAEREELLAQQANS 535
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 93 SEASQAADESERIRKA-LENRTNMED-DRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
S A +A ++S + A L+ ++ED D++ E+ L S E++ + + V + PW
Sbjct: 84 SRAVEAQEDSRKEASAELDEDVDIEDLDQIQTPESLLLSFVS-GEDTQDRTDRVKLT-PW 141
Query: 267 LRLTWSAPRSV 299
++ W A R+V
Sbjct: 142 VKFLWEAYRNV 152
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 8 GCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHG 163
G P P PT G V+G ++ + +G+ G+ R AG P Q+G
Sbjct: 236 GEPGPVGPTGVPGLPGVKGDRGEQGARGEKGEQGKTGERGPVGEAGRPGQNG 287
>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
Length = 1145
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 78 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARS 257
ATA LSEA+ A + K +E+ TNM D + ++ + + E+ K ++
Sbjct: 413 ATAVLSEATTALHNVTQGIKTIESVTNMTRDSETLAQSTREKQMPVTLETIKNLANQIKN 472
Query: 258 WP 263
P
Sbjct: 473 TP 474
>SB_59609| Best HMM Match : Tektin (HMM E-Value=0)
Length = 402
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 75 TATAKLSEASQAADESERIRKALENRT-NMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
TA + + A + DESER+R +E RT ++D L+ +++ E D+ E
Sbjct: 26 TAEKERAAAERLRDESERLRVEIEVRTVETQEDVNKKLDQRITDINFWKSELDRNQSE 83
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 78 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKS 212
A L A+ AAD + ++ +E + N DR+ LE ++ + K+
Sbjct: 1000 AKRDLVAANVAADAAREEKRDMERKFNSLKDRIDALEKEIKELKA 1044
>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
Length = 852
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 383 LRLPEISGCYQRHGAPPQAQRFWIHRTR 300
L+ PE GCY+ +G P Q +RT+
Sbjct: 218 LQKPEFVGCYKAYGDRPMPQFLASYRTK 245
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 383 LRLPEISGCYQRHGAPPQAQRFWIHRTR 300
L+ PE GCY+ +G P Q +RT+
Sbjct: 412 LQKPEFVGCYKANGDRPMPQFLASYRTK 439
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 90 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
++E + A ER +K +EN+ DD + LE + ++ EE K+ EE
Sbjct: 601 INEELRMAAAEER-KKEIENKKKEIDDEMRKLEEERTERDRQKEEERKRREE 651
>SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 114 DESERIRKAL-ENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
DE ERI KAL E E + A EA + + + I E E R
Sbjct: 300 DEDERIAKALAEREAKREAEERAKFEADMKEKRGIHEHRISMMRESER 347
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 5 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHG 163
+G P P P G V GAS + + G G+R R T G P G
Sbjct: 549 AGMPGPAGPKGDRGSPGVSGASGAKGAKGHEGGRGKRGQRGETGEQGLPGARG 601
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 RSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCH 181
R G T GPR +RG + Q +RG G R ++ G P ++G R
Sbjct: 293 RPGSKGKTGARGATGPRGLRGLRGPQGNQGLRGLKGSRGVQ------GRPGKNGAKGRNG 346
Query: 182 LGGST-VTGEVHRRG 223
G T G++ RG
Sbjct: 347 APGRTGARGKIGPRG 361
>SB_59301| Best HMM Match : gpW (HMM E-Value=8.4)
Length = 317
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 156 NMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
NME+ +V +S+ K + E+ KK++EV R
Sbjct: 280 NMENRKVCRSRFYVSKVKQLKGENPKKWDEVKR 312
>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 75 TATAKLSEASQAADESE-RIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKK 236
T T +E Q D+SE R KAL++ N+E D+ + L+ + A +D +
Sbjct: 66 TKTVNKAEEVQTHDDSESRTDKALDSSKNVEADQNNQAQQALTTTTANATNTDTR 120
>SB_42138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 17 EPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR 115
E + PT G EV + RH + QP RR
Sbjct: 13 ESSSPTVDKGTAEVNKGTEVRHEVVIHEQPSRR 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,390
Number of Sequences: 59808
Number of extensions: 199151
Number of successful extensions: 905
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -