Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1529X
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   3.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   4.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   4.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   4.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 240 RISCPTPRRWTSPV 199
           R+SCP  R +T P+
Sbjct: 64  RVSCPVLRAYTCPI 77


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 222 PRRWTSPVTVEPP 184
           P RWT+P T   P
Sbjct: 441 PERWTTPTTPHSP 453


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 290 RRAPSQPQPWPATS 249
           ++AP Q   WP+TS
Sbjct: 581 QQAPGQSPDWPSTS 594


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 96  RTAWRWRSRDAPRTSRGPPPAV 31
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 96  RTAWRWRSRDAPRTSRGPPPAV 31
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 96  RTAWRWRSRDAPRTSRGPPPAV 31
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 96  RTAWRWRSRDAPRTSRGPPPAV 31
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 234 KYEEVARSWPWLRLTWSAPRSVPSPV 311
           K++   R W  + L W+   ++ SP+
Sbjct: 296 KHKNNRRVWLTILLVWAISAAIGSPI 321


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 65  ASRDRHRQAVRGQPG 109
           A RD H++   G+PG
Sbjct: 484 AFRDMHKELCDGKPG 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,690
Number of Sequences: 438
Number of extensions: 1945
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)