BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1529X (384 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g43583.1 68416.m04636 hypothetical protein 31 0.26 At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 30 0.46 At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 30 0.61 At5g55820.1 68418.m06956 expressed protein 29 0.81 At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATP... 29 0.81 At4g40020.1 68417.m05666 hypothetical protein 29 1.1 At3g10820.1 68416.m01303 transcription elongation factor-related... 28 1.9 At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 28 2.5 At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 2.5 At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 27 3.3 At4g35320.1 68417.m05020 expressed protein predicted protein, Ar... 27 3.3 At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 3.3 At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 3.3 At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 4.3 At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 4.3 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 4.3 At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain... 27 4.3 At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 4.3 At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 5.7 At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 26 7.5 At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 26 7.5 At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 26 7.5 At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 26 7.5 At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 26 7.5 At4g35520.1 68417.m05049 DNA mismatch repair family protein simi... 26 9.9 At4g19060.1 68417.m02808 disease resistance protein-related cont... 26 9.9 At2g22140.1 68415.m02630 expressed protein ; expression supporte... 26 9.9 At1g18265.1 68414.m02278 expressed protein 26 9.9 >At3g43583.1 68416.m04636 hypothetical protein Length = 100 Score = 31.1 bits (67), Expect = 0.26 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 338 PPQAQRFWIHRTRHAPRRAPSQPQPWPA 255 PP + F HR+ H P P P+P P+ Sbjct: 7 PPHCRGFHCHRSNHRPPEKPPSPEPPPS 34 >At1g79830.1 68414.m09326 expressed protein weak similarity to TATA element modulatory factor (TMF) (Swiss-Prot:P82094) [Homo sapiens] Length = 927 Score = 30.3 bits (65), Expect = 0.46 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +3 Query: 75 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245 T ++L EA A +E +++ R + R+ +LEAQLS ++ + K E+ Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703 >At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 1663 Score = 29.9 bits (64), Expect = 0.61 Identities = 10/32 (31%), Positives = 21/32 (65%) Frame = +3 Query: 171 RVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266 R++++ +L + KS+ +ES +Y + A+ W W Sbjct: 469 RLSVVNQRLEE-KSVTKESQNRYSKAAKDWGW 499 >At5g55820.1 68418.m06956 expressed protein Length = 1826 Score = 29.5 bits (63), Expect = 0.81 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +3 Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275 +A +AA+ S+RI + EN ++ + + + A+ Q +E +KK +E R + Sbjct: 1520 KALEAAEASKRIAEQKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEM 1579 Query: 276 TW 281 W Sbjct: 1580 AW 1581 >At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATPase, putative / vacuolar proton pump, putative similar to Swiss-Prot:O82629 vacuolar ATP synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump G subunit 2) [Arabidopsis thaliana] Length = 108 Score = 29.5 bits (63), Expect = 0.81 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +3 Query: 72 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVA 251 A TAKL+ QA DE+E+ + +R E Q + AK + +E+D + + Sbjct: 26 AARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQVSGTDQEADAKRLDDETDVRITNLK 85 Query: 252 RS 257 S Sbjct: 86 ES 87 >At4g40020.1 68417.m05666 hypothetical protein Length = 615 Score = 29.1 bits (62), Expect = 1.1 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +3 Query: 87 KLSEASQAADESERIRKAL-ENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245 K++EA A D ++++K L E ME+++ L Q S K + E +KK EE Sbjct: 348 KVNEAV-ANDNIKKLKKMLSEIEVAMEEEKQRSLNRQESMPKEVVEVVEKKIEE 400 >At3g10820.1 68416.m01303 transcription elongation factor-related low similarity to transcription elongation factor TFIIS.h [Mus musculus] GI:3288547 Length = 416 Score = 28.3 bits (60), Expect = 1.9 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 78 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESD-KKYEEVAR 254 AT + EAS + DE RIR L N+ +D++ ++L L + +S++ D K E+ + Sbjct: 96 ATGEGEEASVSVDEVMRIRDILSNK---DDEKDSVLLESLRKLESMSMSVDILKDTEIGK 152 Query: 255 SWPWLR 272 + LR Sbjct: 153 AVNGLR 158 >At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) identical to fibrillarin 1 GI:9965653 from [Arabidopsis thaliana]; C-terminus identical to SKP1 interacting partner 7 GI:10716959 from [Arabidopsis thaliana]; contains Pfam domain PF01269: Fibrillarin Length = 308 Score = 27.9 bits (59), Expect = 2.5 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = +2 Query: 38 GGGPREVRGAS--RDRHRQAVRGQ--PGRR*IRANTQGAGEPHQHGG 166 GGG RG S R R R A RG+ P R ++ ++ EPH+H G Sbjct: 32 GGGRSGDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEPHRHAG 78 >At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:499047) [Arabidopsis thaliana] Length = 1730 Score = 27.9 bits (59), Expect = 2.5 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 117 ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254 E E + K LE ++ + + E+ +S ++ +ES++KYEE+++ Sbjct: 985 EIEELSKGLEMTNDLAAENEQLKES-VSSLQNKIDESERKYEEISK 1029 Score = 26.6 bits (56), Expect = 5.7 Identities = 16/54 (29%), Positives = 32/54 (59%) Frame = +3 Query: 93 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254 S A+ ++ER++K + ++ +D V+ LE ++ +E++KKYEE +R Sbjct: 1140 SLTEDASIDNERVKKLADENKDL-NDLVSSLEKKI-------DETEKKYEEASR 1185 >At5g65410.1 68418.m08226 zinc finger homeobox family protein / ZF-HD homeobox family protein similar to hypothetical proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD homeobox family protein GP|13374061 (Flaveria bidentis);GP:5091602 {Oryza sativa} Length = 279 Score = 27.5 bits (58), Expect = 3.3 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -2 Query: 353 QRHGAPPQAQRFWIHRTRHAPRRAPS 276 Q G P Q + W+H +H ++PS Sbjct: 230 QETGVPRQVLKVWLHNNKHTLGKSPS 255 >At4g35320.1 68417.m05020 expressed protein predicted protein, Arabidopsis thaliana Length = 147 Score = 27.5 bits (58), Expect = 3.3 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +3 Query: 99 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266 A+ A DE IR+ L + + ++ A + A+ ++KS++ ++ V W W Sbjct: 25 AATADDEPGLIRRRLSSLSLNLSNQPAAIAARFPRSKSVSAMGEQAGSSVKEWWEW 80 >At3g63070.1 68416.m07084 PWWP domain-containing protein putative transcription factor HUA2, Arabidopsis thaliana, EMBL:AF116556 Length = 1347 Score = 27.5 bits (58), Expect = 3.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -1 Query: 189 PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPR-TAWRWRSRDAPRTSRGPPP 37 PPR +PP GSP P +R+ PR ++ R P + PPP Sbjct: 1167 PPRM---NPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215 >At1g55420.1 68414.m06339 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 725 Score = 27.5 bits (58), Expect = 3.3 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = -1 Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97 PP + R PPC PA P R RRP +P Sbjct: 5 PPHFSRAKPPCRLSDPAQPHKLCR-RRRPSYP 35 >At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; related to hydroxyproline-rich glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765 Length = 219 Score = 27.1 bits (57), Expect = 4.3 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -1 Query: 219 RRWTSPVTVEPPRWQRDHPPCWCG----SPAPCVFARIHRRPGWPRT 91 +R P+ +R PP G SP P + A HRRP P T Sbjct: 9 KRQPPPLATTAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPAT 55 >At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At4g05280, At1g25886, At4g03300 Length = 1139 Score = 27.1 bits (57), Expect = 4.3 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = -2 Query: 350 RHGAPPQAQRFWIHRTRHAPRRAPSQP 270 + PPQ + ++ R R+AP +P +P Sbjct: 407 KQSRPPQLEETYVKRKRNAPGPSPKEP 433 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 27.1 bits (57), Expect = 4.3 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Frame = -1 Query: 240 RISCPTP-RRWTSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPGWPRTAWRWRSRDA 64 R P P RR SP P R +R P +P AR HR P P R S A Sbjct: 300 RRQSPAPSRRRRSPSP--PARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPA 357 Query: 63 PRTSRGPPPA 34 R R PPPA Sbjct: 358 -RRHRSPPPA 366 >At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing protein / MATH domain-containing protein low similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 693 Score = 27.1 bits (57), Expect = 4.3 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = +3 Query: 192 QLSQAKSIAEESDKKYEEVARSWPW 266 Q S+ KS+ +ES ++ + + W W Sbjct: 441 QRSEEKSVTKESQNRFSKAEKDWGW 465 >At1g62440.1 68414.m07044 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 826 Score = 27.1 bits (57), Expect = 4.3 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Frame = -1 Query: 255 YEQPLRISCPTPRRWTSPVTVEPPRWQRDHPPCWCGS---PAPCVFARIHRRPGWPRTAW 85 Y P+ S P P + PVT PP + P S P+P + + + P P T Sbjct: 696 YYPPVTQSPPPPPVYYLPVTQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSPPPPSTPV 755 Query: 84 RWRSRDAPRTSRGPPP 37 + +P S PPP Sbjct: 756 EYHPPASPNQS--PPP 769 >At1g05320.1 68414.m00539 myosin-related similar to non-muscle myosin II heavy chain (GI:19879404) [Loligo pealei]; ESTs gb|AA042402,gb|ATTS1380 come from this gene Length = 828 Score = 26.6 bits (56), Expect = 5.7 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +3 Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQA---KSIAEESDKKYEEVA 251 EA + + ++ LE + + D+R + +A LSQA S+ E+ K EE++ Sbjct: 112 EAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELS 166 >At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) almost identical to ubiquitin-specific protease 12 GI:11993471 [Arabidopsis thaliana], one amino acid difference Length = 1115 Score = 26.2 bits (55), Expect = 7.5 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270 G P Q QRFWI R P++P Sbjct: 618 GVPVQLQRFWIWAKRQNHTYRPNRP 642 >At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) almost identical to ubiquitin-specific protease 12 GI:11993471 [Arabidopsis thaliana], one amino acid difference Length = 1116 Score = 26.2 bits (55), Expect = 7.5 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270 G P Q QRFWI R P++P Sbjct: 619 GVPVQLQRFWIWAKRQNHTYRPNRP 643 >At3g11910.1 68416.m01460 ubiquitin-specific protease, putative strong similarity to ubiquitin-specific protease 12 (UBP12) [Arabidopsis thaliana] GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain Length = 1115 Score = 26.2 bits (55), Expect = 7.5 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270 G P Q QRFWI R P++P Sbjct: 617 GVPVQLQRFWIWAKRQNHTYRPNRP 641 >At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]; myosin my5A (SP:Q02440) {Gallus gallus} Length = 1770 Score = 26.2 bits (55), Expect = 7.5 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 87 KLSEASQAAD-ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254 KL A Q E E + K LE ++ + + + S + I +ESD KYEE ++ Sbjct: 966 KLQSALQDMQLEFEELAKELEMTNDLAAENEQLKDLVSSLQRKI-DESDSKYEETSK 1021 >At1g55380.1 68414.m06334 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 661 Score = 26.2 bits (55), Expect = 7.5 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = -1 Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97 PP + R PPC PA P + R RRP P Sbjct: 5 PPYFSRAKPPCRLSDPAQPHMLCR-RRRPSHP 35 >At4g35520.1 68417.m05049 DNA mismatch repair family protein similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repair protein, C-terminal domain Length = 1151 Score = 25.8 bits (54), Expect = 9.9 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 108 AADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWL 269 AADE R+ E RT +D + I L + + + Y E R W W+ Sbjct: 947 AADERIRLE---ELRTKFINDALLIFVLTLKVLPEMGYQLLQSYSEQIRDWGWI 997 >At4g19060.1 68417.m02808 disease resistance protein-related contains Pfam domain, PF00931: NB-ARC domain, a novel signalling motif found in plant resistance gene products Length = 383 Score = 25.8 bits (54), Expect = 9.9 Identities = 13/63 (20%), Positives = 29/63 (46%) Frame = +3 Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275 E + D + K + +ED+ ++ + + KSI +E+ ++ EE + RL Sbjct: 156 ETKEDEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARL 215 Query: 276 TWS 284 ++ Sbjct: 216 LYA 218 >At2g22140.1 68415.m02630 expressed protein ; expression supported by MPSS Length = 506 Score = 25.8 bits (54), Expect = 9.9 Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Frame = +3 Query: 132 RKALENRTN-MEDDRVAILEAQLSQAKSIAEESD-KKYEEVARSW 260 R++ E++T+ ME+ ++ + +L +A S AEE++ K+ E+ + W Sbjct: 185 RQSKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKW 229 >At1g18265.1 68414.m02278 expressed protein Length = 280 Score = 25.8 bits (54), Expect = 9.9 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = +3 Query: 87 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266 +L + +AA+ + A+ + ME +++E + Q K +AE+ +EV +S W Sbjct: 210 ELEKERRAAESAAEEAMAMLLKLRMEK---SVVEMETKQYKRVAEQKQVYDQEVIQSLQW 266 Query: 267 L 269 + Sbjct: 267 M 267 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,765,653 Number of Sequences: 28952 Number of extensions: 136352 Number of successful extensions: 597 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 596 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 537681456 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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