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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1529X
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43583.1 68416.m04636 hypothetical protein                          31   0.26 
At1g79830.1 68414.m09326 expressed protein weak similarity to TA...    30   0.46 
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    30   0.61 
At5g55820.1 68418.m06956 expressed protein                             29   0.81 
At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATP...    29   0.81 
At4g40020.1 68417.m05666 hypothetical protein                          29   1.1  
At3g10820.1 68416.m01303 transcription elongation factor-related...    28   1.9  
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...    28   2.5  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   2.5  
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z...    27   3.3  
At4g35320.1 68417.m05020 expressed protein predicted protein, Ar...    27   3.3  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   3.3  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    27   3.3  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    27   4.3  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    27   4.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   4.3  
At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain...    27   4.3  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   4.3  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    27   5.7  
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    26   7.5  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    26   7.5  
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s...    26   7.5  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    26   7.5  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    26   7.5  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    26   9.9  
At4g19060.1 68417.m02808 disease resistance protein-related cont...    26   9.9  
At2g22140.1 68415.m02630 expressed protein ; expression supporte...    26   9.9  
At1g18265.1 68414.m02278 expressed protein                             26   9.9  

>At3g43583.1 68416.m04636 hypothetical protein
          Length = 100

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 338 PPQAQRFWIHRTRHAPRRAPSQPQPWPA 255
           PP  + F  HR+ H P   P  P+P P+
Sbjct: 7   PPHCRGFHCHRSNHRPPEKPPSPEPPPS 34


>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
           element modulatory factor (TMF) (Swiss-Prot:P82094)
           [Homo sapiens]
          Length = 927

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 75  TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
           T  ++L EA   A  +E   +++  R +    R+ +LEAQLS  ++   +  K  E+
Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  ubiquitin-specific protease 12 [Arabidopsis
           thaliana] GI:11993471; contains Pfam profile PF00917:
           MATH domain
          Length = 1663

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 171 RVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
           R++++  +L + KS+ +ES  +Y + A+ W W
Sbjct: 469 RLSVVNQRLEE-KSVTKESQNRYSKAAKDWGW 499


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 96   EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275
            +A +AA+ S+RI +  EN   ++ + + +  A+  Q     +E +KK +E  R      +
Sbjct: 1520 KALEAAEASKRIAEQKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEM 1579

Query: 276  TW 281
             W
Sbjct: 1580 AW 1581


>At4g25950.1 68417.m03733 vacuolar ATP synthase, putative /
           V-ATPase, putative / vacuolar proton pump, putative
           similar to Swiss-Prot:O82629 vacuolar ATP synthase
           subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump
           G subunit 2) [Arabidopsis thaliana]
          Length = 108

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 72  ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVA 251
           A  TAKL+   QA DE+E+  +   +R   E         Q + AK + +E+D +   + 
Sbjct: 26  AARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQVSGTDQEADAKRLDDETDVRITNLK 85

Query: 252 RS 257
            S
Sbjct: 86  ES 87


>At4g40020.1 68417.m05666 hypothetical protein
          Length = 615

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 87  KLSEASQAADESERIRKAL-ENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
           K++EA  A D  ++++K L E    ME+++   L  Q S  K + E  +KK EE
Sbjct: 348 KVNEAV-ANDNIKKLKKMLSEIEVAMEEEKQRSLNRQESMPKEVVEVVEKKIEE 400


>At3g10820.1 68416.m01303 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547
          Length = 416

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 78  ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESD-KKYEEVAR 254
           AT +  EAS + DE  RIR  L N+   +D++ ++L   L + +S++   D  K  E+ +
Sbjct: 96  ATGEGEEASVSVDEVMRIRDILSNK---DDEKDSVLLESLRKLESMSMSVDILKDTEIGK 152

Query: 255 SWPWLR 272
           +   LR
Sbjct: 153 AVNGLR 158


>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 38  GGGPREVRGAS--RDRHRQAVRGQ--PGRR*IRANTQGAGEPHQHGG 166
           GGG    RG S  R R R A RG+  P R  ++  ++   EPH+H G
Sbjct: 32  GGGRSGDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEPHRHAG 78


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 117  ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
            E E + K LE   ++  +   + E+ +S  ++  +ES++KYEE+++
Sbjct: 985  EIEELSKGLEMTNDLAAENEQLKES-VSSLQNKIDESERKYEEISK 1029



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +3

Query: 93   SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
            S    A+ ++ER++K  +   ++ +D V+ LE ++       +E++KKYEE +R
Sbjct: 1140 SLTEDASIDNERVKKLADENKDL-NDLVSSLEKKI-------DETEKKYEEASR 1185


>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to hypothetical
           proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
           homeobox family protein GP|13374061 (Flaveria
           bidentis);GP:5091602 {Oryza sativa}
          Length = 279

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 353 QRHGAPPQAQRFWIHRTRHAPRRAPS 276
           Q  G P Q  + W+H  +H   ++PS
Sbjct: 230 QETGVPRQVLKVWLHNNKHTLGKSPS 255


>At4g35320.1 68417.m05020 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 147

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 99  ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
           A+ A DE   IR+ L + +    ++ A + A+  ++KS++   ++    V   W W
Sbjct: 25  AATADDEPGLIRRRLSSLSLNLSNQPAAIAARFPRSKSVSAMGEQAGSSVKEWWEW 80


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 189  PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPR-TAWRWRSRDAPRTSRGPPP 37
            PPR    +PP   GSP P   +R+      PR     ++ R  P +   PPP
Sbjct: 1167 PPRM---NPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97
           PP + R  PPC    PA P    R  RRP +P
Sbjct: 5   PPHFSRAKPPCRLSDPAQPHKLCR-RRRPSYP 35


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = -1

Query: 219 RRWTSPVTVEPPRWQRDHPPCWCG----SPAPCVFARIHRRPGWPRT 91
           +R   P+       +R  PP   G    SP P + A  HRRP  P T
Sbjct: 9   KRQPPPLATTAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPAT 55


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 350 RHGAPPQAQRFWIHRTRHAPRRAPSQP 270
           +   PPQ +  ++ R R+AP  +P +P
Sbjct: 407 KQSRPPQLEETYVKRKRNAPGPSPKEP 433


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 240 RISCPTP-RRWTSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPGWPRTAWRWRSRDA 64
           R   P P RR  SP    P R +R   P      +P   AR HR P  P    R  S  A
Sbjct: 300 RRQSPAPSRRRRSPSP--PARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPA 357

Query: 63  PRTSRGPPPA 34
            R  R PPPA
Sbjct: 358 -RRHRSPPPA 366


>At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 693

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 QLSQAKSIAEESDKKYEEVARSWPW 266
           Q S+ KS+ +ES  ++ +  + W W
Sbjct: 441 QRSEEKSVTKESQNRFSKAEKDWGW 465


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 255 YEQPLRISCPTPRRWTSPVTVEPPRWQRDHPPCWCGS---PAPCVFARIHRRPGWPRTAW 85
           Y  P+  S P P  +  PVT  PP     + P    S   P+P  +  + + P  P T  
Sbjct: 696 YYPPVTQSPPPPPVYYLPVTQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSPPPPSTPV 755

Query: 84  RWRSRDAPRTSRGPPP 37
            +    +P  S  PPP
Sbjct: 756 EYHPPASPNQS--PPP 769


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 96  EASQAADESERIRKALENRTNMEDDRVAILEAQLSQA---KSIAEESDKKYEEVA 251
           EA +  +  ++    LE +  + D+R +  +A LSQA    S+ E+  K  EE++
Sbjct: 112 EAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELS 166


>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1115

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
           G P Q QRFWI   R      P++P
Sbjct: 618 GVPVQLQRFWIWAKRQNHTYRPNRP 642


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1116

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
           G P Q QRFWI   R      P++P
Sbjct: 619 GVPVQLQRFWIWAKRQNHTYRPNRP 643


>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
           strong similarity to ubiquitin-specific protease 12
           (UBP12) [Arabidopsis thaliana] GI:11993471; contains
           Pfam profiles PF00443: Ubiquitin carboxyl-terminal
           hydrolase, PF00917: MATH domain
          Length = 1115

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
           G P Q QRFWI   R      P++P
Sbjct: 617 GVPVQLQRFWIWAKRQNHTYRPNRP 641


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 87   KLSEASQAAD-ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
            KL  A Q    E E + K LE   ++  +   + +   S  + I +ESD KYEE ++
Sbjct: 966  KLQSALQDMQLEFEELAKELEMTNDLAAENEQLKDLVSSLQRKI-DESDSKYEETSK 1021


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97
           PP + R  PPC    PA P +  R  RRP  P
Sbjct: 5   PPYFSRAKPPCRLSDPAQPHMLCR-RRRPSHP 35


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
            to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
            protein homolog 3) {Homo sapiens}; contains Pfam profiles
            PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
            HSP90-like domain protein, PF01119: DNA mismatch repair
            protein, C-terminal domain
          Length = 1151

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 108  AADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWL 269
            AADE  R+    E RT   +D + I    L     +  +  + Y E  R W W+
Sbjct: 947  AADERIRLE---ELRTKFINDALLIFVLTLKVLPEMGYQLLQSYSEQIRDWGWI 997


>At4g19060.1 68417.m02808 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 383

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 96  EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275
           E  +  D    + K +     +ED+    ++ +  + KSI +E+ ++ EE  +     RL
Sbjct: 156 ETKEDEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARL 215

Query: 276 TWS 284
            ++
Sbjct: 216 LYA 218


>At2g22140.1 68415.m02630 expressed protein ; expression supported
           by MPSS
          Length = 506

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +3

Query: 132 RKALENRTN-MEDDRVAILEAQLSQAKSIAEESD-KKYEEVARSW 260
           R++ E++T+ ME+ ++   + +L +A S AEE++ K+ E+  + W
Sbjct: 185 RQSKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKW 229


>At1g18265.1 68414.m02278 expressed protein
          Length = 280

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 87  KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
           +L +  +AA+ +     A+  +  ME    +++E +  Q K +AE+     +EV +S  W
Sbjct: 210 ELEKERRAAESAAEEAMAMLLKLRMEK---SVVEMETKQYKRVAEQKQVYDQEVIQSLQW 266

Query: 267 L 269
           +
Sbjct: 267 M 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,765,653
Number of Sequences: 28952
Number of extensions: 136352
Number of successful extensions: 597
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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