Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1529X
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43583.1 68416.m04636 hypothetical protein 31 0.26
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 30 0.46
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 30 0.61
At5g55820.1 68418.m06956 expressed protein 29 0.81
At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATP... 29 0.81
At4g40020.1 68417.m05666 hypothetical protein 29 1.1
At3g10820.1 68416.m01303 transcription elongation factor-related... 28 1.9
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 28 2.5
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 2.5
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 27 3.3
At4g35320.1 68417.m05020 expressed protein predicted protein, Ar... 27 3.3
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 3.3
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 3.3
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 4.3
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 4.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 4.3
At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain... 27 4.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 4.3
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 5.7
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 26 7.5
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 26 7.5
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 26 7.5
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 26 7.5
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 26 7.5
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi... 26 9.9
At4g19060.1 68417.m02808 disease resistance protein-related cont... 26 9.9
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 26 9.9
At1g18265.1 68414.m02278 expressed protein 26 9.9
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 31.1 bits (67), Expect = 0.26
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 338 PPQAQRFWIHRTRHAPRRAPSQPQPWPA 255
PP + F HR+ H P P P+P P+
Sbjct: 7 PPHCRGFHCHRSNHRPPEKPPSPEPPPS 34
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 30.3 bits (65), Expect = 0.46
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 75 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
T ++L EA A +E +++ R + R+ +LEAQLS ++ + K E+
Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis
thaliana] GI:11993471; contains Pfam profile PF00917:
MATH domain
Length = 1663
Score = 29.9 bits (64), Expect = 0.61
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 171 RVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
R++++ +L + KS+ +ES +Y + A+ W W
Sbjct: 469 RLSVVNQRLEE-KSVTKESQNRYSKAAKDWGW 499
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.5 bits (63), Expect = 0.81
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275
+A +AA+ S+RI + EN ++ + + + A+ Q +E +KK +E R +
Sbjct: 1520 KALEAAEASKRIAEQKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEM 1579
Query: 276 TW 281
W
Sbjct: 1580 AW 1581
>At4g25950.1 68417.m03733 vacuolar ATP synthase, putative /
V-ATPase, putative / vacuolar proton pump, putative
similar to Swiss-Prot:O82629 vacuolar ATP synthase
subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump
G subunit 2) [Arabidopsis thaliana]
Length = 108
Score = 29.5 bits (63), Expect = 0.81
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 72 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVA 251
A TAKL+ QA DE+E+ + +R E Q + AK + +E+D + +
Sbjct: 26 AARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQVSGTDQEADAKRLDDETDVRITNLK 85
Query: 252 RS 257
S
Sbjct: 86 ES 87
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 KLSEASQAADESERIRKAL-ENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEE 245
K++EA A D ++++K L E ME+++ L Q S K + E +KK EE
Sbjct: 348 KVNEAV-ANDNIKKLKKMLSEIEVAMEEEKQRSLNRQESMPKEVVEVVEKKIEE 400
>At3g10820.1 68416.m01303 transcription elongation factor-related
low similarity to transcription elongation factor
TFIIS.h [Mus musculus] GI:3288547
Length = 416
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 78 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESD-KKYEEVAR 254
AT + EAS + DE RIR L N+ +D++ ++L L + +S++ D K E+ +
Sbjct: 96 ATGEGEEASVSVDEVMRIRDILSNK---DDEKDSVLLESLRKLESMSMSVDILKDTEIGK 152
Query: 255 SWPWLR 272
+ LR
Sbjct: 153 AVNGLR 158
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 38 GGGPREVRGAS--RDRHRQAVRGQ--PGRR*IRANTQGAGEPHQHGG 166
GGG RG S R R R A RG+ P R ++ ++ EPH+H G
Sbjct: 32 GGGRSGDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEPHRHAG 78
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 117 ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
E E + K LE ++ + + E+ +S ++ +ES++KYEE+++
Sbjct: 985 EIEELSKGLEMTNDLAAENEQLKES-VSSLQNKIDESERKYEEISK 1029
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +3
Query: 93 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
S A+ ++ER++K + ++ +D V+ LE ++ +E++KKYEE +R
Sbjct: 1140 SLTEDASIDNERVKKLADENKDL-NDLVSSLEKKI-------DETEKKYEEASR 1185
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 27.5 bits (58), Expect = 3.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 353 QRHGAPPQAQRFWIHRTRHAPRRAPS 276
Q G P Q + W+H +H ++PS
Sbjct: 230 QETGVPRQVLKVWLHNNKHTLGKSPS 255
>At4g35320.1 68417.m05020 expressed protein predicted protein,
Arabidopsis thaliana
Length = 147
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 99 ASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
A+ A DE IR+ L + + ++ A + A+ ++KS++ ++ V W W
Sbjct: 25 AATADDEPGLIRRRLSSLSLNLSNQPAAIAARFPRSKSVSAMGEQAGSSVKEWWEW 80
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 189 PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPR-TAWRWRSRDAPRTSRGPPP 37
PPR +PP GSP P +R+ PR ++ R P + PPP
Sbjct: 1167 PPRM---NPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97
PP + R PPC PA P R RRP +P
Sbjct: 5 PPHFSRAKPPCRLSDPAQPHKLCR-RRRPSYP 35
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -1
Query: 219 RRWTSPVTVEPPRWQRDHPPCWCG----SPAPCVFARIHRRPGWPRT 91
+R P+ +R PP G SP P + A HRRP P T
Sbjct: 9 KRQPPPLATTAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPAT 55
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 27.1 bits (57), Expect = 4.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 350 RHGAPPQAQRFWIHRTRHAPRRAPSQP 270
+ PPQ + ++ R R+AP +P +P
Sbjct: 407 KQSRPPQLEETYVKRKRNAPGPSPKEP 433
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.1 bits (57), Expect = 4.3
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -1
Query: 240 RISCPTP-RRWTSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPGWPRTAWRWRSRDA 64
R P P RR SP P R +R P +P AR HR P P R S A
Sbjct: 300 RRQSPAPSRRRRSPSP--PARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPA 357
Query: 63 PRTSRGPPPA 34
R R PPPA
Sbjct: 358 -RRHRSPPPA 366
>At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 693
Score = 27.1 bits (57), Expect = 4.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 192 QLSQAKSIAEESDKKYEEVARSWPW 266
Q S+ KS+ +ES ++ + + W W
Sbjct: 441 QRSEEKSVTKESQNRFSKAEKDWGW 465
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 4.3
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = -1
Query: 255 YEQPLRISCPTPRRWTSPVTVEPPRWQRDHPPCWCGS---PAPCVFARIHRRPGWPRTAW 85
Y P+ S P P + PVT PP + P S P+P + + + P P T
Sbjct: 696 YYPPVTQSPPPPPVYYLPVTQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSPPPPSTPV 755
Query: 84 RWRSRDAPRTSRGPPP 37
+ +P S PPP
Sbjct: 756 EYHPPASPNQS--PPP 769
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQA---KSIAEESDKKYEEVA 251
EA + + ++ LE + + D+R + +A LSQA S+ E+ K EE++
Sbjct: 112 EAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELS 166
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
G P Q QRFWI R P++P
Sbjct: 618 GVPVQLQRFWIWAKRQNHTYRPNRP 642
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
G P Q QRFWI R P++P
Sbjct: 619 GVPVQLQRFWIWAKRQNHTYRPNRP 643
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 344 GAPPQAQRFWIHRTRHAPRRAPSQP 270
G P Q QRFWI R P++P
Sbjct: 617 GVPVQLQRFWIWAKRQNHTYRPNRP 641
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 26.2 bits (55), Expect = 7.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 KLSEASQAAD-ESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVAR 254
KL A Q E E + K LE ++ + + + S + I +ESD KYEE ++
Sbjct: 966 KLQSALQDMQLEFEELAKELEMTNDLAAENEQLKDLVSSLQRKI-DESDSKYEETSK 1021
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 189 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 97
PP + R PPC PA P + R RRP P
Sbjct: 5 PPYFSRAKPPCRLSDPAQPHMLCR-RRRPSHP 35
>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) {Homo sapiens}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF01119: DNA mismatch repair
protein, C-terminal domain
Length = 1151
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 108 AADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWL 269
AADE R+ E RT +D + I L + + + Y E R W W+
Sbjct: 947 AADERIRLE---ELRTKFINDALLIFVLTLKVLPEMGYQLLQSYSEQIRDWGWI 997
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +3
Query: 96 EASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPWLRL 275
E + D + K + +ED+ ++ + + KSI +E+ ++ EE + RL
Sbjct: 156 ETKEDEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARL 215
Query: 276 TWS 284
++
Sbjct: 216 LYA 218
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +3
Query: 132 RKALENRTN-MEDDRVAILEAQLSQAKSIAEESD-KKYEEVARSW 260
R++ E++T+ ME+ ++ + +L +A S AEE++ K+ E+ + W
Sbjct: 185 RQSKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKW 229
>At1g18265.1 68414.m02278 expressed protein
Length = 280
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 87 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAKSIAEESDKKYEEVARSWPW 266
+L + +AA+ + A+ + ME +++E + Q K +AE+ +EV +S W
Sbjct: 210 ELEKERRAAESAAEEAMAMLLKLRMEK---SVVEMETKQYKRVAEQKQVYDQEVIQSLQW 266
Query: 267 L 269
+
Sbjct: 267 M 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,765,653
Number of Sequences: 28952
Number of extensions: 136352
Number of successful extensions: 597
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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