Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1524
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.1  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 TDNNRLDHGRSMDSLPSSYTAGSSSPGLNGPAS 250
           T +   D G   ++  +S+T G+S+P +  P+S
Sbjct: 45  TGSTNGDGGARSNADSTSHTDGASTPDVRPPSS 77


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 116 QEVYYHH 96
           QEVYYHH
Sbjct: 61  QEVYYHH 67


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 TDNNRLDHGRSMDSLPSSYTAGSSSPGLNGPAS 250
           T +   D G   ++  +S+T G+S+P +  P+S
Sbjct: 201 TGSTNGDGGARSNADSTSHTDGASTPDVRPPSS 233


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 116 QEVYYHH 96
           QEVYYHH
Sbjct: 61  QEVYYHH 67


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 116 QEVYYHH 96
           QEVYYHH
Sbjct: 61  QEVYYHH 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,756
Number of Sequences: 336
Number of extensions: 2891
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)