Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1524
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.084
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.11
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 30 0.26
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 28 1.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 28 1.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.2
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 26 5.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.7
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 25 9.7
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.7
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.9 bits (69), Expect = 0.084
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 271 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 450
D+ ++ ++ +LQN LD+LS+ +D ++ + E L + IE ++SS F++
Sbjct: 275 DKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFEN 334
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTT 456
+ E+ L +++L+LQN + DLS DS+ E+ LRS L + +L + +T
Sbjct: 1614 ENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRS----LEDSVASLQKECKIKSNTV 1669
Query: 457 PNIQ 468
++Q
Sbjct: 1670 ESLQ 1673
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTTP 459
+E + L SQ L +Q+ L + +DS K E K ++ Q+L E ++ +
Sbjct: 80 KELSELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLK 139
Query: 460 NIQ 468
NI+
Sbjct: 140 NIE 142
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 140 ISDDTDNNRLDHGRSMDSLPSSYTAGSSSPGLNGPAS 250
IS D+N + S ++ +SYT+GS S +G +S
Sbjct: 472 ISLTADSNAVSRNSSASTMSTSYTSGSGSSNSSGSSS 508
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 101 DNIPLADDDPQVIISDDTDNNRLDHGRSMDSLPSSYTAG 217
DNI ADDDP + + + + ++ D P +YT G
Sbjct: 74 DNIDPADDDPNSVAAPKVEEKK-SKKKAKDEKPLTYTTG 111
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 420
Q E+ L+ ++ EL++ + V++ N ++ EN+ L +YI N
Sbjct: 381 QSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRN 428
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 274 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 402
+ E RL + +DD+S ++++K + K+ SEN+ L
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGL 274
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 423
++E L S+ L L++L S KE+ +K+ N+++ ENL
Sbjct: 374 RKENLFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENL 422
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 564 YLIINYQRFMFPTQQHKLLKPMKIIWLNNSLLLYIGSSGLKY 439
Y+ I + T H+ ++ +W+ N++LLY LKY
Sbjct: 517 YVYIVKKNLELITSIHETIRIKSAVWVENNVLLYATLDHLKY 558
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 313 ELQNTLDDLSQRVDSVKEENLKLRSEN 393
EL+N L++ SQR+ ++E+ K SEN
Sbjct: 1609 ELENQLNEKSQRIKELEEQAQKNSSEN 1635
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 494 IFIGFSNLCCCV-GNINL**LIIK*-LVTDIMIQIYLWVLVHNLLYILVKKM 643
I+ F + C+ NI++ ++ + I I+ WV H+LLYI+ K +
Sbjct: 291 IYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIFFWVWCHSLLYIVPKTL 342
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 437 QYFNPLLPIYKRSELFNHIIFIGFSN 514
QY P+ ++ ++L N+I + FSN
Sbjct: 192 QYLTPIFQFFQENQLANNIAGLAFSN 217
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 292 RLISQVLELQNTLDDLSQRVDSV------KEENLK-LRSENQVLGQYIENLMSASS 438
RL +V +L+N LD +++R + + KEE ++ L +EN+ + Q ENL S
Sbjct: 556 RLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELS 611
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 379 LRSENQVLGQYIENLMSASSVFQSTTPNIQKK 474
L+ N +L Y+EN S+ SVF P+I+ K
Sbjct: 255 LQKNNDILKTYVENAKSSLSVF----PDIEAK 282
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -2
Query: 334 HPEYFEAPKLVISNEPFPLAH--LCRNQVKTSW 242
HPEYF+ L NE +P R V T W
Sbjct: 24 HPEYFQLATLPTGNEIYPRNRTVAIRGFVGTGW 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,367
Number of Sequences: 5004
Number of extensions: 49421
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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