Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1524
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0290 + 3843610-3843712,3844088-3846003 37 0.012
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 34 0.087
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 32 0.47
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 30 1.9
04_01_0301 + 4016588-4016627,4016715-4018837 29 2.5
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 2.5
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340... 29 3.3
09_03_0214 - 13517895-13518012,13519008-13519052,13519611-135196... 28 5.7
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 28 5.7
01_06_1261 - 35826513-35828941,35829201-35829294 28 5.7
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 7.6
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 7.6
06_01_0799 - 5964410-5964565,5964709-5964750,5968762-5968803,596... 28 7.6
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161... 28 7.6
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 7.6
03_05_0259 + 22444269-22444297,22444818-22445536,22445588-224459... 28 7.6
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 28 7.6
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 408
+EKA+++ + ++L++ L+++ +D +K EN KLRSE V Q
Sbjct: 146 DEKAKMMMESVDLKSRLEEIQGNMDMIKSENDKLRSEALVAEQ 188
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 34.3 bits (75), Expect = 0.087
Identities = 13/43 (30%), Positives = 30/43 (69%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 408
+EKA+++ + ++L++ ++++ +D ++ EN KLRSE + Q
Sbjct: 130 DEKAKMMMESVDLKSRIEEIQGNMDMIESENDKLRSEALIAEQ 172
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 268 IDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 408
++ Q+E L ++LE + L+ L + ++ ++ L SENQVL Q
Sbjct: 1247 LEVQKESDELSREILEKDSKLNQLQEMIERLETNLSSLESENQVLRQ 1293
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +2
Query: 92 CGDDNIPLADDDPQVIISDDTDNNRLDHGRSMDS-----LPSSYTAGSSSPGLNGPASFD 256
C D P DD P + + T N D +S+ S PSS T SSS G + +D
Sbjct: 544 CASD-FPSRDDSPALRLYHATSNGYTDVKKSLSSSTKVDAPSSITNSSSSVGEDASIRYD 602
Query: 257 LIPA*MSKR 283
P S+R
Sbjct: 603 SKPPLHSQR 611
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 408
+EK +++ + +L+ L+++ D V+ EN +LRSE + Q
Sbjct: 255 DEKDKMMMESADLKRRLEEIQANKDLVESENDRLRSEALITKQ 297
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 268 IDEQEEKARLISQVLE----LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 435
+ E EK +S LE + + L ++ +K ENL L EN L +NL +
Sbjct: 308 LQETNEKCTFLSSQLEKAQLAEKEVQTLLSEIEKIKNENLMLSRENDNLKACEQNLGTEC 367
Query: 436 SVFQST 453
S ++T
Sbjct: 368 SQLKAT 373
>04_01_0256 +
3402982-3402984,3403077-3403158,3403307-3403449,
3403557-3403832,3404136-3404315
Length = 227
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 423
Q +K + L+ ++L+ +VD+ ++EN +L EN+ L + I++L
Sbjct: 115 QADKTAAEEEQKRLKRDKENLNLKVDTKRKENRRLEEENKKLQRKIKDL 163
>09_03_0214 -
13517895-13518012,13519008-13519052,13519611-13519687,
13520536-13520668,13522210-13522322
Length = 161
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 501 MKIIWLNNSLLLYIGSSGLK 442
+K I +NNSLLLY GSS ++
Sbjct: 89 LKRITINNSLLLYAGSSAIR 108
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 301 SQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 432
S V +LQ+ LD ++ + KE+N KL EN+ L I +L+ A
Sbjct: 50 SAVKDLQSKLDAVNTECLAEKEKNKKLIIENEKLQYRITHLIRA 93
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +1
Query: 301 SQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 447
+Q+ ++N D+L +R+DS+++E L ++ L + ++ + Q
Sbjct: 350 AQINRMKNEADELQKRLDSLEDEKAALIEDSSKLSERLKQVEEVLQTIQ 398
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 271 DEQEEKARLISQVLE-LQNTLDDLSQRVDSVKEENLKLRSENQ 396
+E++E+ +L+ + +E L+ T+ L +VD +KEE + R +
Sbjct: 2298 EEKDEEVKLLERSIEELETTVCALENKVDIIKEEAERQRMHRE 2340
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 283 EKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 435
E+ RL+SQ+ EL + L +S +++EE LKL + ++ E +AS
Sbjct: 1425 EEGRLMSQIKELNDNLKIISIDKGNLEEEILKLTDKLEMAVALAEENEAAS 1475
>06_01_0799 -
5964410-5964565,5964709-5964750,5968762-5968803,
5968903-5968998,5970549-5970630,5973820-5974001
Length = 199
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 98 DDNIPLADDDPQV----IISDDTDNNRLDHGRSMDSLPSSYTAGSSSPGLNG 241
++N+ L D PQV + DT+N + G+S +S+ ++ +GSS +G
Sbjct: 140 EENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVMTALNSGSSQDNDDG 191
>05_07_0167 +
28115290-28115349,28115952-28115996,28116087-28116179,
28116259-28116342,28116949-28117131,28117234-28117276,
28117671-28117891,28118060-28118137,28118404-28118529,
28118616-28118825
Length = 380
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 310 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 438
L Q +DL+ +V+S+ EN LRSE L + E L +S
Sbjct: 266 LRKQAETEDLATQVESLTAENTSLRSEISRLSESSEKLRLENS 308
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENL 375
+EEK +L S + E +D+L Q + ++EENL
Sbjct: 797 REEKDKLCSIIDERCRNIDELQQHIAVLEEENL 829
>03_05_0259 +
22444269-22444297,22444818-22445536,22445588-22445937,
22449455-22449757
Length = 466
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 438
E +A ++ L + N + + V ++EE +LR + +LG+ ++ +ASS
Sbjct: 57 ETQAAIVKLDLGMNNWRPQVEEAVQELREEVGELRQQVDLLGKAVQTSTAASS 109
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 304 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 420
++ L+ +D + + + ENL L+ EN++L Q EN
Sbjct: 680 KIARLETLVDGILPTEELMHAENLSLQDENKILHQKYEN 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,552
Number of Sequences: 37544
Number of extensions: 272879
Number of successful extensions: 771
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -