Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1524
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49450.1 68418.m06118 bZIP family transcription factor simila... 31 0.51
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 31 0.68
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.68
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 31 0.90
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 31 0.90
At4g24880.1 68417.m03560 expressed protein 30 1.2
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 1.6
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 30 1.6
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 2.1
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 29 2.1
At2g35530.1 68415.m04352 bZIP transcription factor family protei... 29 2.1
At4g26020.1 68417.m03747 expressed protein weak similarity to ca... 29 3.6
At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putati... 29 3.6
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 28 4.8
At3g24870.1 68416.m03119 expressed protein 28 4.8
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 28 4.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 6.3
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 28 6.3
At3g24880.1 68416.m03120 expressed protein 28 6.3
At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical... 28 6.3
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical... 28 6.3
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 28 6.3
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy... 28 6.3
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 28 6.3
At4g34590.1 68417.m04914 bZIP transcription factor family protei... 27 8.4
At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to S... 27 8.4
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 27 8.4
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 27 8.4
>At5g49450.1 68418.m06118 bZIP family transcription factor similar
to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]
Length = 145
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 271 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYI---ENLMSASSV 441
D E + L ++ E + QR+DSV+ EN LRSE L Y+ EN+++ +S+
Sbjct: 41 DTIHEISSLERRIKENSERCRAVKQRLDSVETENAGLRSEKIWLSSYVSDLENMIATTSL 100
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 268 IDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 420
+ Q+ + R + + EL+N + DL + ++E L++ENQ+L ++N
Sbjct: 100 VSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 150
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 265 GIDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 429
GI +E +R + ++ N L+D+ + S+++EN EN VL +++ L S
Sbjct: 955 GIGSGDENSRDQRNMHDILNRLEDMQTMLLSIRDENQHSAIENLVLIEFLRQLKS 1009
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSE 390
Q + L +Q+ E ++LSQ +SV +EN+ LR E
Sbjct: 162 QSSRTSLENQIFETATKSEELSQMAESVAKENVMLRHE 199
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSE 390
Q + L +Q+ E ++LSQ +SV +EN+ LR E
Sbjct: 128 QSSRTSLENQIFETATKSEELSQMAESVAKENVMLRHE 165
>At4g24880.1 68417.m03560 expressed protein
Length = 417
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 134 VIISDDTDNNRLDHGRSMDSLPSSYTAGSSSPGLNGPAS 250
V+ SD T +R+ +G ++ PS+ G+ G +GPA+
Sbjct: 130 VVSSDGTTVSRVRNGSTLHLFPSALPGGARKKGASGPAN 168
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 271 DEQEEKARLIS-QVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 402
DE+EE+ +L+ V EL+ T++ L +V+ VK+E + R + + L
Sbjct: 2245 DEREEEVKLLEGSVEELEYTINVLENKVNVVKDEAERQRLQREEL 2289
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 146 DDTDNNRLDHGRSMDSLPSSYTAGSSSPGLN 238
D NRLD G+ +S+PS+ +G+ P N
Sbjct: 1493 DPESVNRLDPGKEKESIPSNLVSGNEQPDSN 1523
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
Xenopus laevis, PIR:T30335
Length = 1229
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 IDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 447
+ QEEK +L S++ + L + + VD + +++LKL E + + IE + +
Sbjct: 1060 LKSQEEKTKLQSEMKLSREKLASVRKEVDDMTKKSLKLEKEIKTMETEIEKSSKTRTESE 1119
Query: 448 STTPN-IQKK 474
N IQ+K
Sbjct: 1120 MELENTIQEK 1129
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 594 YICIIISVTSYLIINYQRFMFPTQQHKLLKPMKIIWLNNSLLLYIGSSGLKY 439
Y + + +Y + Y ++PTQQH ++II+L ++ L + + ++Y
Sbjct: 1377 YYLFSLILFTYAVTEYAWSIYPTQQHAAGLALRIIFLAKAMSLALQAIQIRY 1428
>At2g35530.1 68415.m04352 bZIP transcription factor family protein
contains Pfam domain PF00170: bZIP transcription factor;
similar to G-Box binding protein 2 (GI:5381313)
[Catharanthus roseus].
Length = 409
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +1
Query: 223 KPWLKRTS*F*PDSGIDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 402
+PWL+ E AR L Q D+L+QR + + EEN LR+E L
Sbjct: 297 QPWLQDDRELKRQRRKQSNRESAR--RSRLRKQAECDELAQRAEVLNEENTNLRAEINKL 354
Query: 403 GQYIENLMSASS 438
E L + ++
Sbjct: 355 KSQCEELTTENT 366
>At4g26020.1 68417.m03747 expressed protein weak similarity to
cardiac muscle factor 1 [Gallus gallus] GI:14422164
Length = 247
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 283 EKARLISQVLELQNTLDDLSQR-VDSVKEENLKLRSENQVL 402
+K LIS+ + D S R V+++K++ +KLR EN++L
Sbjct: 200 QKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEIL 240
>At1g26960.1 68414.m03287 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3 (SP:Q00466| [Arabidopsis
thaliana]; similar to Helianthus annuus gi|349379, and
carrot, gi|1435022. Contains Homeobox domain motif
Length = 255
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSV 441
Q +AR S+ +L+ D L ++ +S+++EN L+++NQ L + L S +
Sbjct: 117 QNRRAR--SKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREPI 169
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 274 EQEEKARLISQVLELQNTLDDLSQRV--DSVKEENLKLRSENQV 399
+ EE+ RLI++ L++ D+L R +S+KE N + E QV
Sbjct: 102 QHEERERLINKKTALEDEEDELLARTLEESLKENNRRKMFEEQV 145
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 236 LSQGLKIQQCKNWVMSPSNDHDLNGCYPCH 147
L+ + ++Q +W P N+ D+NG Y H
Sbjct: 947 LNPSVHVEQKDHWKKRPENNFDMNGLYGPH 976
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 283 EKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 402
+KA L SQ+ + T++ L+Q++D + KLR E + L
Sbjct: 398 QKAMLESQIAKSDGTMEKLNQKLDIAVKLLQKLRDEREEL 437
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 277 QEEKARLISQVLELQNTL---DDLSQRVDSVKEENLKLRSENQVL 402
++EK RL LELQ +L +D +RVDS ++ L+SE L
Sbjct: 479 EDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSEL 523
>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
protein similar to TAR RNA loop binding protein [Homo
sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
rRNA Methylase (RNA methyltransferase, TrmH) family
Length = 1850
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 295 LISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTTPNIQKK 474
++S +LELQN D +S+ SVK ++ + S+ Q Q + + S F +I K+
Sbjct: 838 ILSMLLELQNMQDGISELSSSVKSKS-GIGSDEQTGKQIVVDASSIKKKFAVVLLSILKE 896
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 236 LSQGLKIQQCKNWVMSPSNDHDLNGCYPCH 147
L + ++Q +W P N+ D+NG Y H
Sbjct: 952 LDPSVHVEQKDHWKKRPENNFDMNGLYGPH 981
>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
G-box binding factor 3 (GBF3) SP:P42776 from
[Arabidopsis thaliana]; contains Pfam profile: PF00170
bZIP transcription factor
Length = 359
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 310 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 438
L Q ++L+++V+++ EN+ LRSE L + + L A++
Sbjct: 255 LRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA 297
>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
G-box binding factor 3 (GBF3) SP:P42776 from
[Arabidopsis thaliana]; contains Pfam profile: PF00170
bZIP transcription factor
Length = 382
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 310 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 438
L Q ++L+++V+++ EN+ LRSE L + + L A++
Sbjct: 278 LRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA 320
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 283 EKARLISQVLELQNTLDDLSQ---RVDSVKEENLKLRSENQVLGQYIENLMSA 432
++ + + Q L TLD+ + ++D +E++ KLR E +V+G+ + L A
Sbjct: 170 QRHKELLQTLTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVA 222
>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
symporter (SUC2) nearly identical to sucrose-proton
symporter SUC2 [Arabidopsis thaliana] GI:407092
Length = 512
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 134 VIISDDTDNNRLDHGRSMDSLPSSYTAGS 220
V+++ +N+R DHG + P + TAG+
Sbjct: 379 VVVTKQAENHRRDHGGAKTGPPGNVTAGA 407
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 259 DSGIDEQEEKARLISQVLELQNTLDDLSQRVDSVK 363
DS D +++ L S+++ELQ LDD + ++ +K
Sbjct: 239 DSLKDSEKKVVALESEIVELQKQLDDAEKMINGLK 273
>At4g34590.1 68417.m04914 bZIP transcription factor family protein
similar to common plant regulatory factor 7 GI:9650828
from [Petroselinum crispum]
Length = 159
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +1
Query: 310 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 450
++ Q LDDL+ +V+ +K+EN ++ + + Q+ + + +SV ++
Sbjct: 44 MKKQKLLDDLTAQVNHLKKENTEIVTSVSITTQHYLTVEAENSVLRA 90
>At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to
SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
thaliana}, syntaxin 5A GB:NP_003155 from [Homo sapiens]
(J. Mol. Neurosci. (1997) 8 (2), 159-161)
Length = 347
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +1
Query: 328 LDDLSQRV-DSVKE--ENLKLRSENQVLGQYIENLMSASSVFQSTTPNIQKK 474
+DDL R+ D+ KE + L +R+EN + + L S+++ +ST P ++++
Sbjct: 144 VDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQR 195
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 256 PDSGIDEQEEKARLISQVLELQNTLDDLSQRVDSVKE----ENLKLRSENQVLGQYIENL 423
PD+ E + + + + L+ TLDD +DSVKE E K ++L Y
Sbjct: 151 PDAN-KELRKSRTMFGKSVPLEKTLDDARSYIDSVKEAFHDEPAKYAEFLKLLNDYKARR 209
Query: 424 MSASSV 441
+ A SV
Sbjct: 210 LDADSV 215
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 280 EEKARLISQVLELQNTLDDLSQ---RVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 450
E+ A+L + +L +T +L + +VD E +R + +L + E++ SAS + ++
Sbjct: 574 EKAAKLATLEQQLASTRAELKKSALKVDECSSEAKDVRLQMSLLNEKYESVKSASELLET 633
Query: 451 TTPNIQKK 474
T ++++
Sbjct: 634 ETETLKRE 641
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,062
Number of Sequences: 28952
Number of extensions: 243078
Number of successful extensions: 802
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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