Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1520
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    31   0.14 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    29   0.97 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    29   0.97 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    28   1.7  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    27   3.9  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    27   3.9  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    27   3.9  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   3.9  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   6.8  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -3

Query: 352 SQKNPFLTFLMRSSINSATKLLASRLFLCSSFEYAVRHLV 233
           + KN F   L  SS       L + LFLCS  +Y VRHLV
Sbjct: 365 TDKNIFTYSLKTSSFVPFAGNLITELFLCSDNKYYVRHLV 404


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +2

Query: 494 RSMEWIIGKKCIICAIEFNDV---KKHITSVKHIF-NMLKFDVQFGIYGGLYRKTMDDSF 661
           RS + +  + C+ CA  F+     KKH+ +   ++    ++ V          + +   F
Sbjct: 200 RSSQRLSPRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGF 259

Query: 662 HCLTCNEVFESPTRACISSHFLHPNHQEI-YD 754
            CLTCN  F+S     + +H     H  I YD
Sbjct: 260 TCLTCNREFKS--LEAVRAHMQQKGHTSIAYD 289


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 309 IEDRIRKV--KKGFFCEFCNKYLSTI 380
           +EDR+R     KG+ C FCNK  S++
Sbjct: 123 VEDRMRNDFDSKGYVCPFCNKKFSSL 148


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 388 EGSM*QAMSISVIRAPISSSVWRMAWFSLETLLSRKKHGMDHWKEMHY 531
           +GS+   ++IS    P  +S ++ AW SL   L +K+   D +K++H+
Sbjct: 430 DGSVDFLVNISFPSEPSENS-FQKAWISLMDKLKKKEKDEDVYKDVHF 476


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 289 LASRLFLCSSFEYAVRHLV 233
           L + LF CS  +Y VRHLV
Sbjct: 386 LITELFFCSDSKYYVRHLV 404


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 641 KTMDDSFHCLTCNEVFESPTRACISSHF 724
           K +D S  CL C+E F +P     S  F
Sbjct: 21  KGLDSSLRCLICHEYFRAPLITSCSHTF 48


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 509 IIGKKCIICAIEFNDVKKHITSVKHIFNMLKFDVQFGI-YGGLY 637
           +IG   +IC     D K+   + K ++ +++ ++++ + YGG++
Sbjct: 166 VIGHFDLICLFAPEDAKEVFKNSKSVWELIQRNIKYAVSYGGIF 209


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 578 KHIFNMLKFDVQFGIYGGLYRKTMDDSFHCLTCNEVFESPTRACISSH 721
           KH+    + +V F      ++K +D  F C  C  +F  P   C + H
Sbjct: 236 KHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCH 283


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 640 EDDGRFVPLLN-LQRGF*KPNSSV 708
           ++D R +P+LN L +GF  P SS+
Sbjct: 245 DEDDRLLPILNHLSKGFVAPESSI 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,868
Number of Sequences: 5004
Number of extensions: 65903
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)