Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1520
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 32 0.44
01_01_1125 - 8920590-8924372 31 0.77
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 31 1.3
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 30 2.3
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 29 3.1
03_05_0213 - 22037268-22039496 29 5.4
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 28 7.1
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 28 7.1
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 28 9.4
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 28 9.4
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 207 RLRNLPSKRTRCRTAYSKEEHKKSLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIK 386
+L+ + CR+ + K+S E S F EF+ ++ K+ GF + N + T +
Sbjct: 354 KLKRKKTDMVACRSGSKRSRGKRSEEKSEFCDEFVLEK-AKLIHGFCVDLAN-LMKTYVP 411
Query: 387 GRFHV 401
G HV
Sbjct: 412 GEVHV 416
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 477 NIVITKEAWNGSLERNAL---FALLNSMM*RSTLPALNTFSIC*SSMCNSGFTVD 632
NIVI NG ++ L F L + + LP L T+SI +++C GF D
Sbjct: 925 NIVIHNSVLNGLCQQGCLTEAFRLFDYLESSEVLPTLVTYSILIAALCREGFLDD 979
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 309 IEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIRNK 428
I +++++K FFC CNK + H++ +H K
Sbjct: 191 IRSEVKEIQKVFFCSLCNKQYKLAHEFESHLSSYDHNHRK 230
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 102 LNRDSLCFICCAYLKDGFEVYQERNTNKDIAFVLSRLR 215
L++ S CFICC +L G + E N D+ +L + R
Sbjct: 356 LHQTSFCFICC-HLTSGEKEGDELRRNSDVMEILRKTR 392
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 102 LNRDSLCFICCAYLKDGFEVYQERNTNKDIAFVLSRLR 215
L+ S CFICC +L G + E N D+ +L + R
Sbjct: 362 LHHTSFCFICC-HLTSGEKEGDELRRNSDVMEILRKTR 398
>03_05_0213 - 22037268-22039496
Length = 742
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 477 NIVITKEAWNGSLERNALFALLNSMM*RSTLPALNTFSIC*SSMC 611
NIV+ NG LE +LN M+ R LP + TF+ +++C
Sbjct: 325 NIVVNCLCKNGQLEEAK--GILNQMVDRGCLPDITTFNTLIAALC 367
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 237 RCRTAYSKEEHKKSLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEH 416
R R EEH+++L + A F+ R+ K ++CN+ ++T +HV G
Sbjct: 743 RVRRLAGDEEHRRALVSGEVKAAFL--RVSHAKL-LLAKYCNELMTT--GPVYHVAGLGF 797
Query: 417 IRNKGAYLFERLENGMV-LFRNIVITK 494
+ KG+ L + ++ +F N I +
Sbjct: 798 VFPKGSPLLADISQAILEVFENGTIQR 824
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 147 DGFEVYQERNTNKDIAFVLSRLRNLPSKRTRCRTAYSKEEHKKSLEAS 290
D FE+ Q R N + +S+L N+ +K+ +EH K L S
Sbjct: 87 DSFEIGQLRAMNDLVILGISQLENVKTKKEARSARLMDKEHLKELSLS 134
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 408 NEHIRNKGAYLFERLENGMVLFRNIV 485
+E+IR G YL E E+G++ N+V
Sbjct: 690 SENIREDGVYLLENGEDGLIYVGNVV 715
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 613 LHIEL*HIENVFNAGNVLLHIIEFNSANNAFLSNDPFH 500
L E+ I+ ++ V+ H+ EFNS F N PFH
Sbjct: 203 LPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFH 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,410,384
Number of Sequences: 37544
Number of extensions: 388911
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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