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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1520
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1)                     31   1.0  
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)                     30   2.4  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    29   4.1  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012)                   28   7.2  
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)                   28   7.2  
SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41)                   28   7.2  
SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              28   9.5  
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     28   9.5  
SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)                28   9.5  

>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 288 SSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIRNKGAYLFERLENGMV 467
           S  + EF+E  +R++     C +C+  L  ++KG     GN+ +R  G  L ER  +  V
Sbjct: 177 SQDLKEFLEQDLRRILVDHSCGYCS-LLPNLLKGFGWNPGNKLLRWFGEQLKERTGDADV 235

Query: 468 LFRNI 482
            FR +
Sbjct: 236 TFREV 240


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = +3

Query: 369 LSTIIKGRFHVTGNEHIRNKGAYLFERLENGMVLFRNIVITKEAW---NGSLERNALFAL 539
           ++ +++G   V  N+ +R     L  +L  G +L     + + A       L R AL  L
Sbjct: 170 MNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRRALLVL 229

Query: 540 LNSMM*RSTLPALNTFSIC*SSMCNSGFTVDCTGRRWTIR 659
           +N ++ R     L     C S+ C +G T       WT R
Sbjct: 230 MNKLLRRGLSRGLWAVDPCFSNPCLNGGTCTADQSNWTYR 269


>SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1)
          Length = 98

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 345 FCEFCNKYLSTIIKGRFHVTGNEHIR 422
           FC+ CN+Y S++   R H+ G +H++
Sbjct: 8   FCKTCNQYFSSLHNKREHMYGRQHLQ 33


>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
          Length = 323

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 716 TKYTLELGFQKPRCKLSNGTNRPSSSCTVHRKS 618
           T Y L+ G  KP C  +NG   P+ SC++  +S
Sbjct: 187 TNYNLDTGRLKPECATANGI--PTDSCSISDRS 217


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 629  GLYRKTMDDSFHCLTCNEVFES-PTRAC---ISSHFLHPNHQEIY 751
            G +  T  +SF  L C+      PT  C   +S    HP HQE+Y
Sbjct: 2214 GFHNATSSNSFAFLRCDSCSNLLPTSGCHASLSCASTHPRHQEVY 2258


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255 SKEEHKKSLE-ASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIR 422
           SKEE KKS+  A+  V   ++    K ++ + C+ C    +     R H+ G +H++
Sbjct: 327 SKEEVKKSINLANQNVDMLVKTLFDKGRQKYVCKVCKIMCNKEHAFRMHLHGKKHVK 383


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 342  FFCEFCNKYLSTIIKGRFHVTGNEHI 419
            F+C+ CN Y++++I    H    +H+
Sbjct: 1366 FYCKLCNCYIASVITKELHAKSIKHV 1391


>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 276 SLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLS--TIIKGRFHVT 404
           S E  ++ +    +  +++KK + CEFC KY+   TI++    VT
Sbjct: 457 SYEIDTWYSSPYPEEYQRLKKIYLCEFCLKYMKSPTILRRHMVVT 501


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 458 WHGSL*KHCYHERSMEWIIGKKCIICAIEF 547
           WH  + +  + E    + +GK CI CA+++
Sbjct: 41  WHLDVFRRSFREIKGHYCMGKSCIFCALQY 70


>SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012)
          Length = 598

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766
           E+FE+ TR A +S H    +H+E  D++ER
Sbjct: 308 EIFEARTRIASLSCHVFEASHREPSDEIER 337


>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
          Length = 882

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766
           E+FE+ TR A +S H    +H+E  D++ER
Sbjct: 592 EIFEARTRIASLSCHVFEASHREPSDEIER 621


>SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41)
          Length = 113

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +3

Query: 261 EEHKKSLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEH 416
           +E ++  +      + IE+ ++ +K+ F+CE C+K      +   H+   +H
Sbjct: 58  QELRQKYQTEQEKEKIIEESLQDLKEMFYCELCDKQYFKYKEYDNHINSYDH 109


>SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 510 SLERNALFALLNSMM*RSTLPALNTFSI 593
           +L R   F+LL++++ R TLP +N FS+
Sbjct: 4   TLPRVNAFSLLDTLLGRDTLPRVNAFSL 31


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 671 TCNEVF---ESPTRACISSHFLHPNHQEIY 751
           TC + F    +P+ AC + HF  P+++E+Y
Sbjct: 635 TCKQPFLVRPNPSYACATCHFEDPSYKEVY 664


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
 Frame = +2

Query: 536 AIEFNDVKKHITSVKHIFNMLKFDVQFGI-------YGGLYRKTMDDSFHCLTCNEVFES 694
           A  F+D+ KH+ S      M+ F   FG        + GL        FHC T N +  S
Sbjct: 9   ACTFDDIFKHVNSFGRYPQMMYFAFSFGFIFTMEGQFSGLVFLMGTPRFHCATPN-ITCS 67

Query: 695 PTRAC 709
           P   C
Sbjct: 68  PNTCC 72


>SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)
          Length = 200

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 KGFFCEFCNKYLSTIIKGRFHVTGNEHI 419
           +G+F +F   Y +   +GRFH T N H+
Sbjct: 25  QGYFYDFTESYCNE--RGRFHWTNNNHL 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,150,430
Number of Sequences: 59808
Number of extensions: 488554
Number of successful extensions: 1214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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