BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1520 (768 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25 SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77 SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1) 31 1.0 SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) 30 2.4 SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 29 4.1 SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012) 28 7.2 SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) 28 7.2 SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41) 28 7.2 SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) 28 9.5 SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 9.5 SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6) 28 9.5 >SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 641 Score = 33.1 bits (72), Expect = 0.25 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +3 Query: 288 SSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIRNKGAYLFERLENGMV 467 S + EF+E +R++ C +C+ L ++KG GN+ +R G L ER + V Sbjct: 177 SQDLKEFLEQDLRRILVDHSCGYCS-LLPNLLKGFGWNPGNKLLRWFGEQLKERTGDADV 235 Query: 468 LFRNI 482 FR + Sbjct: 236 TFREV 240 >SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 555 Score = 31.5 bits (68), Expect = 0.77 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Frame = +3 Query: 369 LSTIIKGRFHVTGNEHIRNKGAYLFERLENGMVLFRNIVITKEAW---NGSLERNALFAL 539 ++ +++G V N+ +R L +L G +L + + A L R AL L Sbjct: 170 MNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRRALLVL 229 Query: 540 LNSMM*RSTLPALNTFSIC*SSMCNSGFTVDCTGRRWTIR 659 +N ++ R L C S+ C +G T WT R Sbjct: 230 MNKLLRRGLSRGLWAVDPCFSNPCLNGGTCTADQSNWTYR 269 >SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1) Length = 98 Score = 31.1 bits (67), Expect = 1.0 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +3 Query: 345 FCEFCNKYLSTIIKGRFHVTGNEHIR 422 FC+ CN+Y S++ R H+ G +H++ Sbjct: 8 FCKTCNQYFSSLHNKREHMYGRQHLQ 33 >SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) Length = 323 Score = 29.9 bits (64), Expect = 2.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 716 TKYTLELGFQKPRCKLSNGTNRPSSSCTVHRKS 618 T Y L+ G KP C +NG P+ SC++ +S Sbjct: 187 TNYNLDTGRLKPECATANGI--PTDSCSISDRS 217 >SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2937 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = +2 Query: 629 GLYRKTMDDSFHCLTCNEVFES-PTRAC---ISSHFLHPNHQEIY 751 G + T +SF L C+ PT C +S HP HQE+Y Sbjct: 2214 GFHNATSSNSFAFLRCDSCSNLLPTSGCHASLSCASTHPRHQEVY 2258 >SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) Length = 844 Score = 29.1 bits (62), Expect = 4.1 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 255 SKEEHKKSLE-ASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIR 422 SKEE KKS+ A+ V ++ K ++ + C+ C + R H+ G +H++ Sbjct: 327 SKEEVKKSINLANQNVDMLVKTLFDKGRQKYVCKVCKIMCNKEHAFRMHLHGKKHVK 383 >SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1926 Score = 29.1 bits (62), Expect = 4.1 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = +3 Query: 342 FFCEFCNKYLSTIIKGRFHVTGNEHI 419 F+C+ CN Y++++I H +H+ Sbjct: 1366 FYCKLCNCYIASVITKELHAKSIKHV 1391 >SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 28.7 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 276 SLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLS--TIIKGRFHVT 404 S E ++ + + +++KK + CEFC KY+ TI++ VT Sbjct: 457 SYEIDTWYSSPYPEEYQRLKKIYLCEFCLKYMKSPTILRRHMVVT 501 >SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 864 Score = 28.7 bits (61), Expect = 5.5 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +2 Query: 458 WHGSL*KHCYHERSMEWIIGKKCIICAIEF 547 WH + + + E + +GK CI CA+++ Sbjct: 41 WHLDVFRRSFREIKGHYCMGKSCIFCALQY 70 >SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012) Length = 598 Score = 28.3 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766 E+FE+ TR A +S H +H+E D++ER Sbjct: 308 EIFEARTRIASLSCHVFEASHREPSDEIER 337 >SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) Length = 882 Score = 28.3 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766 E+FE+ TR A +S H +H+E D++ER Sbjct: 592 EIFEARTRIASLSCHVFEASHREPSDEIER 621 >SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41) Length = 113 Score = 28.3 bits (60), Expect = 7.2 Identities = 11/52 (21%), Positives = 26/52 (50%) Frame = +3 Query: 261 EEHKKSLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEH 416 +E ++ + + IE+ ++ +K+ F+CE C+K + H+ +H Sbjct: 58 QELRQKYQTEQEKEKIIEESLQDLKEMFYCELCDKQYFKYKEYDNHINSYDH 109 >SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 36 Score = 27.9 bits (59), Expect = 9.5 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +3 Query: 510 SLERNALFALLNSMM*RSTLPALNTFSI 593 +L R F+LL++++ R TLP +N FS+ Sbjct: 4 TLPRVNAFSLLDTLLGRDTLPRVNAFSL 31 >SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) Length = 1120 Score = 27.9 bits (59), Expect = 9.5 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = +2 Query: 671 TCNEVF---ESPTRACISSHFLHPNHQEIY 751 TC + F +P+ AC + HF P+++E+Y Sbjct: 635 TCKQPFLVRPNPSYACATCHFEDPSYKEVY 664 >SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) Length = 509 Score = 27.9 bits (59), Expect = 9.5 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Frame = +2 Query: 536 AIEFNDVKKHITSVKHIFNMLKFDVQFGI-------YGGLYRKTMDDSFHCLTCNEVFES 694 A F+D+ KH+ S M+ F FG + GL FHC T N + S Sbjct: 9 ACTFDDIFKHVNSFGRYPQMMYFAFSFGFIFTMEGQFSGLVFLMGTPRFHCATPN-ITCS 67 Query: 695 PTRAC 709 P C Sbjct: 68 PNTCC 72 >SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6) Length = 200 Score = 27.9 bits (59), Expect = 9.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 336 KGFFCEFCNKYLSTIIKGRFHVTGNEHI 419 +G+F +F Y + +GRFH T N H+ Sbjct: 25 QGYFYDFTESYCNE--RGRFHWTNNNHL 50 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,150,430 Number of Sequences: 59808 Number of extensions: 488554 Number of successful extensions: 1214 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1213 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2083999566 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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