Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1520
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1) 31 1.0
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) 30 2.4
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 29 4.1
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012) 28 7.2
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012) 28 7.2
SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41) 28 7.2
SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) 28 9.5
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 9.5
SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6) 28 9.5
>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 288 SSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIRNKGAYLFERLENGMV 467
S + EF+E +R++ C +C+ L ++KG GN+ +R G L ER + V
Sbjct: 177 SQDLKEFLEQDLRRILVDHSCGYCS-LLPNLLKGFGWNPGNKLLRWFGEQLKERTGDADV 235
Query: 468 LFRNI 482
FR +
Sbjct: 236 TFREV 240
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 31.5 bits (68), Expect = 0.77
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +3
Query: 369 LSTIIKGRFHVTGNEHIRNKGAYLFERLENGMVLFRNIVITKEAW---NGSLERNALFAL 539
++ +++G V N+ +R L +L G +L + + A L R AL L
Sbjct: 170 MNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRRALLVL 229
Query: 540 LNSMM*RSTLPALNTFSIC*SSMCNSGFTVDCTGRRWTIR 659
+N ++ R L C S+ C +G T WT R
Sbjct: 230 MNKLLRRGLSRGLWAVDPCFSNPCLNGGTCTADQSNWTYR 269
>SB_12228| Best HMM Match : zf-U1 (HMM E-Value=1.1)
Length = 98
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 345 FCEFCNKYLSTIIKGRFHVTGNEHIR 422
FC+ CN+Y S++ R H+ G +H++
Sbjct: 8 FCKTCNQYFSSLHNKREHMYGRQHLQ 33
>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
Length = 323
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 716 TKYTLELGFQKPRCKLSNGTNRPSSSCTVHRKS 618
T Y L+ G KP C +NG P+ SC++ +S
Sbjct: 187 TNYNLDTGRLKPECATANGI--PTDSCSISDRS 217
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 629 GLYRKTMDDSFHCLTCNEVFES-PTRAC---ISSHFLHPNHQEIY 751
G + T +SF L C+ PT C +S HP HQE+Y
Sbjct: 2214 GFHNATSSNSFAFLRCDSCSNLLPTSGCHASLSCASTHPRHQEVY 2258
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 SKEEHKKSLE-ASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEHIR 422
SKEE KKS+ A+ V ++ K ++ + C+ C + R H+ G +H++
Sbjct: 327 SKEEVKKSINLANQNVDMLVKTLFDKGRQKYVCKVCKIMCNKEHAFRMHLHGKKHVK 383
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 4.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 342 FFCEFCNKYLSTIIKGRFHVTGNEHI 419
F+C+ CN Y++++I H +H+
Sbjct: 1366 FYCKLCNCYIASVITKELHAKSIKHV 1391
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 276 SLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLS--TIIKGRFHVT 404
S E ++ + + +++KK + CEFC KY+ TI++ VT
Sbjct: 457 SYEIDTWYSSPYPEEYQRLKKIYLCEFCLKYMKSPTILRRHMVVT 501
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 458 WHGSL*KHCYHERSMEWIIGKKCIICAIEF 547
WH + + + E + +GK CI CA+++
Sbjct: 41 WHLDVFRRSFREIKGHYCMGKSCIFCALQY 70
>SB_58470| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 598
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766
E+FE+ TR A +S H +H+E D++ER
Sbjct: 308 EIFEARTRIASLSCHVFEASHREPSDEIER 337
>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 680 EVFESPTR-ACISSHFLHPNHQEIYDKLER 766
E+FE+ TR A +S H +H+E D++ER
Sbjct: 592 EIFEARTRIASLSCHVFEASHREPSDEIER 621
>SB_2670| Best HMM Match : zf-C2H2 (HMM E-Value=0.41)
Length = 113
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +3
Query: 261 EEHKKSLEASSFVAEFIEDRIRKVKKGFFCEFCNKYLSTIIKGRFHVTGNEH 416
+E ++ + + IE+ ++ +K+ F+CE C+K + H+ +H
Sbjct: 58 QELRQKYQTEQEKEKIIEESLQDLKEMFYCELCDKQYFKYKEYDNHINSYDH 109
>SB_38853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 510 SLERNALFALLNSMM*RSTLPALNTFSI 593
+L R F+LL++++ R TLP +N FS+
Sbjct: 4 TLPRVNAFSLLDTLLGRDTLPRVNAFSL 31
>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
Length = 1120
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 671 TCNEVF---ESPTRACISSHFLHPNHQEIY 751
TC + F +P+ AC + HF P+++E+Y
Sbjct: 635 TCKQPFLVRPNPSYACATCHFEDPSYKEVY 664
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +2
Query: 536 AIEFNDVKKHITSVKHIFNMLKFDVQFGI-------YGGLYRKTMDDSFHCLTCNEVFES 694
A F+D+ KH+ S M+ F FG + GL FHC T N + S
Sbjct: 9 ACTFDDIFKHVNSFGRYPQMMYFAFSFGFIFTMEGQFSGLVFLMGTPRFHCATPN-ITCS 67
Query: 695 PTRAC 709
P C
Sbjct: 68 PNTCC 72
>SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)
Length = 200
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 336 KGFFCEFCNKYLSTIIKGRFHVTGNEHI 419
+G+F +F Y + +GRFH T N H+
Sbjct: 25 QGYFYDFTESYCNE--RGRFHWTNNNHL 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,150,430
Number of Sequences: 59808
Number of extensions: 488554
Number of successful extensions: 1214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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