Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1520
         (768 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA...    30   4.0  
AY094927-1|AAM11280.1|  375|Drosophila melanogaster RH47633p pro...    29   5.3  
AE013599-2314|AAF57978.1|  503|Drosophila melanogaster CG8311-PA...    29   5.3  

>AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA
           protein.
          Length = 1393

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -3

Query: 412 SLPVTWNLPLIIVD-RYLLQNSQKNPFLTFLMRSSI--NSATKLLASRLFLCSSFEYA-- 248
           SLP T NL    +D R LL    +     F  R  +    ++  LA R+   SSFE+   
Sbjct: 85  SLPFT-NLANRRLDLRLLLDEEGRQRLRHFSSRQVVAPKPSSNSLARRVLKSSSFEWRRR 143

Query: 247 VRHLVRLEGKFRRRD 203
           VRHL  LE ++RR +
Sbjct: 144 VRHLDHLEDQYRREE 158


>AY094927-1|AAM11280.1|  375|Drosophila melanogaster RH47633p
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 427 LLRICSLPVTWNLPLIIVDRYLLQNSQKNPFLTFLM 320
           LL +  +PVT  LPL+ + ++LL++ ++   L F M
Sbjct: 247 LLAVTCMPVTRPLPLLALVQFLLRDQERLAILVFYM 282


>AE013599-2314|AAF57978.1|  503|Drosophila melanogaster CG8311-PA
           protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 427 LLRICSLPVTWNLPLIIVDRYLLQNSQKNPFLTFLM 320
           LL +  +PVT  LPL+ + ++LL++ ++   L F M
Sbjct: 247 LLAVTCMPVTRPLPLLALVQFLLRDQERLAILVFYM 282


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,918,920
Number of Sequences: 53049
Number of extensions: 676348
Number of successful extensions: 1848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)