Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1520
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    31   1.2  
U29082-6|AAL02433.1|  207|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL032652-7|CAA21711.1|  277|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 527 IICAIEFNDV--KKHITSVKHIFNMLKFDVQFGIYGGLYRKTMDD 655
           +I +  +N V  KK +T++++IFN  K  ++  +Y G+ +   DD
Sbjct: 784 MITSFSYNSVAYKKRVTALENIFNSNKKRIRGDLYNGILKTDYDD 828


>U29082-6|AAL02433.1|  207|Caenorhabditis elegans Hypothetical
           protein C14F5.1b protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 NPFLTFLMRSSINSATKLLASRLFLCSSFE 254
           NPF+T L  S+  S  +L  SR  LCSS +
Sbjct: 43  NPFITPLTESTPESWVELAPSRTSLCSSVD 72


>AL032652-7|CAA21711.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.9 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 530 ICAIEFNDVKKHITSVKHIFNMLKFDVQFGIYGGLYR 640
           IC    +D+  ++  +K + N+  F    GI+G LYR
Sbjct: 112 ICVRGEDDISYNLEEIKVVKNLEIFSADCGIFGQLYR 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,127
Number of Sequences: 27780
Number of extensions: 366367
Number of successful extensions: 1083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)