Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1520
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.44 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   3.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   7.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 FFCEFCNKYLSTIIKGRFHVTGNEHIR 422
           F CE CNK L+++ + R H+  N H R
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQ-NVHTR 28



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 653 DSFHCLTCNEVFESPTR 703
           D F C  CN++  S TR
Sbjct: 1   DEFRCEPCNKILTSLTR 17


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 584 IFNMLKFDVQFGIYGGLYRK 643
           IFN++K    F I+G L+ K
Sbjct: 302 IFNLVKISPLFTIWGSLFAK 321


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 584 IFNMLKFDVQFGIYGGLYRK 643
           IFN++K    F I+G L+ K
Sbjct: 52  IFNLVKISPLFTIWGSLFAK 71


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 327 KVKKGFFCEFCNKYLSTIIKGRFHV 401
           + KK F C++C K   ++   + H+
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHI 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 710 YTLELGFQKPRCKLSNGTNRP--SSSCTVHRKSR 615
           Y LELGF  PR K  N   +P       V RKSR
Sbjct: 422 YLLELGF-PPRSK-KNKLKKPRQGDGAAVKRKSR 453


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 333 KKGFFCEFCNKYLSTIIKGRFHVTGNEHIRNKGAY 437
           KK F C+ C K L +    + HV  ++H   +  Y
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRHV-ADKHAERQEEY 36


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 612 NSGFTVDCTGRRWTIRSIA*LAT 680
           NSG T   +G+RW   + A ++T
Sbjct: 239 NSGSTYGVSGQRWQYAARAAIST 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,856
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)