Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1519
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    87   2e-18
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    36   0.003
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    32   0.073
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   6.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   8.4  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 37/82 (45%), Positives = 53/82 (64%)
 Frame = +1

Query: 268 KELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 447
           +E++      AV+   DY+KSIGNY  D DGN  LD ++QI+++P+GYN+P LL A +  
Sbjct: 38  EEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVYSQIATIPIGYNNPTLLKAAKSD 97

Query: 448 HNLKSLINRPALGVFPSADWQR 513
                L+NRPALG +P  +W R
Sbjct: 98  EVATILMNRPALGNYPPKEWAR 119


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
 Frame = +1

Query: 277 NTLQQAGA--VQLFADYD----KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAF 438
           N +++ GA  + ++A Y     K  G+Y FD +G  ++D  + ++   +G+ HPE+    
Sbjct: 38  NIIKKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLA 97

Query: 439 EDQ-----HNLKSLINRPAL 483
            DQ     H+     N PA+
Sbjct: 98  ADQCSKLVHSSNLFYNEPAI 117


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 319 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 474
           + K+ G   +D +G  +LD  +  S++  G+ HP+++ A  +Q    +L +R
Sbjct: 35  FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 454 DCVDLQMRLIIQDDYTPREVKIFV*-----KHLGMHYHRRQRNNFQYFC 323
           + +D   R+I + D    + KIF       K LG+H  R+ +N+++Y C
Sbjct: 773 EAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNSYEYEC 821


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 507 AEKLKNVLLSVGPVGLDNIATMMCGSCSI 593
           +E ++N   S+ P+ ++ IAT+   +CS+
Sbjct: 580 SENVRNACKSLDPLTIERIATLQDFNCSV 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,193
Number of Sequences: 5004
Number of extensions: 47856
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)