Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1519
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 40 0.002
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 38 0.005
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 37 0.011
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 34 0.075
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 34 0.099
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 33 0.17
08_01_0126 - 1008469-1008477,1009055-1009396,1009499-1010167,101... 31 0.92
01_06_0714 + 31413195-31413221,31414238-31414786 30 1.2
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 28 4.9
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 28 6.5
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 28 6.5
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 322 DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHN 453
D+S G+Y +D +G ++DA + S +G N P L+ A DQ N
Sbjct: 126 DRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLIKAATDQLN 169
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 310 FADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 447
+ DY K Y FD DG +LDAF I+++ G+ HP+++ A +Q
Sbjct: 93 YRDYHK----YLFDEDGRRYLDAFGGIATVCCGHCHPDVVEAMVNQ 134
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +1
Query: 319 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 474
+ K G++ D +GN ++D + S++ G+ HP++L A ++Q +L +R
Sbjct: 61 FSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVLRALKEQAERLTLSSR 112
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 340 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 447
Y FD G +LDAF I+++ G+ HP+++ A Q
Sbjct: 74 YLFDERGRRYLDAFAGIATVCCGHCHPDVVGAIAAQ 109
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 33.9 bits (74), Expect = 0.099
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 340 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNL 456
Y +D +G +LD F I ++ G+ HP++++A +Q L
Sbjct: 98 YLYDENGKRYLDCFGGIVTVSCGHCHPDIVNAVVEQTKL 136
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 334 GNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHN 453
G+Y +D+ GN +LD + +G + P L+ A DQ N
Sbjct: 57 GSYVYDSKGNKYLDTLAGLWCTALGGSEPRLVKAATDQLN 96
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ-HNL 456
++S G+Y +D DG +LD+ + +G + P L+ A +Q H L
Sbjct: 515 ERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLVKAATEQLHKL 560
>08_01_0126 -
1008469-1008477,1009055-1009396,1009499-1010167,
1010264-1010446,1010491-1010550,1010551-1010649
Length = 453
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 298 AVQLFADYDKSIGNYFFDADGNAFLDAF 381
AVQ+ AD D SI + +DG F+D F
Sbjct: 66 AVQVLADLDLSINKAYISSDGRWFMDVF 93
>01_06_0714 + 31413195-31413221,31414238-31414786
Length = 191
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 488 FFLQLIGREIEKCVIICWTRWVGQHSDNDVWLLFY 592
+ Q GRE + + WT W N WLL +
Sbjct: 49 YMAQFAGREESRAATVIWTSWALSKCKNFAWLLLH 83
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +1
Query: 301 VQLFADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINRPA 480
VQ+ +D D +I + +DG F+D F + + + E N + RP
Sbjct: 178 VQVLSDLDLAISKAYITSDGGWFMDVFHVVDKQGQKVTDEKTIKHIEKAGNAAAAEERPV 237
Query: 481 LGV 489
+ V
Sbjct: 238 VTV 240
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 209 EPDKPNIQTAIPGPKCSSC 265
EP P + T P P+CSSC
Sbjct: 303 EPPSPAVATPPPPPRCSSC 321
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 262 LLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLD 375
L EL+ QA ADY+ I + D DG+A LD
Sbjct: 311 LRHELSNSDQAARAMTDADYNDEIACHVDDCDGDARLD 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,195,995
Number of Sequences: 37544
Number of extensions: 287677
Number of successful extensions: 718
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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