Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1519
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   1e-12
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           29   2.2  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = +1

Query: 286 QQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKS 462
           Q +  ++ F D++KS GNY  DADGN  LD + QI+S+P+GYNHP LL A +D   L S
Sbjct: 139 QSSKGMKYFVDFEKSKGNYVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQDPEILVS 197



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 504 LAEKLKNVLLSVGPVGLDNIATMMCGSCSIE 596
           L + +++  + V P GL  + TM CG+C+ E
Sbjct: 185 LLKAMQDPEILVSPKGLTEVTTMACGTCANE 215


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 346 FDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 474
           +D  G  ++D     S++  G+ HP ++ A +DQ  + SL +R
Sbjct: 2   WDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSR 44


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 319 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 447
           YD     YFFD D + F        +  + Y   E +S+FED+
Sbjct: 73  YDAETKEYFFDRDPDLFRHLLNYYRNGKLHYPRGECVSSFEDE 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,570
Number of Sequences: 59808
Number of extensions: 329199
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)