Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1518
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 83 5e-17
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 76 6e-15
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 68 1e-12
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 66 7e-12
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 51 2e-07
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 49 6e-07
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 44 3e-05
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 42 7e-05
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 39 7e-04
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 27 2.9
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 27 3.8
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.0
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 8.8
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 8.8
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +1
Query: 1 VASGGSNFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVV 180
VA GG+NFS+G+ DEATA+V TDA++Q++IRK F D T++
Sbjct: 1356 VAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTIL 1415
Query: 181 TVAHRLHTVADSDRVVVMEAGQIVD 255
TVAHR++TV DSDR++V++ G++V+
Sbjct: 1416 TVAHRINTVMDSDRILVLDHGKVVE 1440
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 75.8 bits (178), Expect = 6e-15
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +1
Query: 1 VASGGSNFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVV 180
V GG+N S+G+ DEATA VD TDA++Q++IR+ F D T++
Sbjct: 1354 VTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTIL 1413
Query: 181 TVAHRLHTVADSDRVVVMEAGQIVD 255
T+AHR++TV DS+R++V++ G++V+
Sbjct: 1414 TIAHRINTVMDSNRILVLDHGKVVE 1438
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VASGGSNFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVV 180
VAS GSNFS G+ DE TA+VD D IQK++R+ F D T++
Sbjct: 1349 VASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVDDAMDQKIQKTLREAFGDATML 1408
Query: 181 TVAHRLHTVADSDRVVVMEAGQIVD 255
+AHRL T+ D D+V+V++ G +V+
Sbjct: 1409 CIAHRLKTIVDYDKVMVLDKGVLVE 1433
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 65.7 bits (153), Expect = 7e-12
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VASGGSNFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVV 180
V SGG NFS+G+ DE+TA+VD TD IQ+ +R F TV+
Sbjct: 1318 VDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVL 1377
Query: 181 TVAHRLHTVADSDRVVVMEAGQIVD 255
+AHR+ T+ D D+V+V+++G+ V+
Sbjct: 1378 CIAHRIKTIVDYDKVLVLDSGKTVE 1402
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/54 (38%), Positives = 37/54 (68%)
Frame = +1
Query: 94 DEATANVDPNTDALIQKSIRKHFADCTVVTVAHRLHTVADSDRVVVMEAGQIVD 255
DEAT+ +D ++ L+QK++ T + +AHRL T+ ++D +VV+ AG+IV+
Sbjct: 592 DEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVE 645
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +1
Query: 13 GSNFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVVTVAH 192
GS+ S G+ DEAT+ +D +++ ++Q+++ T V +AH
Sbjct: 1256 GSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAH 1315
Query: 193 RLHTVADSDRVVVMEAGQIVDVAT 264
RL ++ D+D + V + G I + T
Sbjct: 1316 RLSSIQDADCIFVFDGGVIAEAGT 1339
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/71 (30%), Positives = 42/71 (59%)
Frame = +1
Query: 94 DEATANVDPNTDALIQKSIRKHFADCTVVTVAHRLHTVADSDRVVVMEAGQIVDVATLTS 273
DEAT+ +D NT+ IQ ++ + + T + +AHRL T+ ++D ++ + G+IV+ T
Sbjct: 745 DEATSALDTNTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEE 804
Query: 274 YLRTITGISRK 306
++ G +K
Sbjct: 805 LIKRDGGAYKK 815
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 94 DEATANVDPNTDALIQKSIRK--HFADCTVVTVAHRLHTVADSDRVVVMEAGQIVDVATL 267
DEAT+ +D + ++ K+I+ H T +T+AH+L T+ +D+++V+ G++++ +
Sbjct: 644 DEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHKLATIRRADQIIVVGDGKVLEQGSF 703
Query: 268 TSYLRTITGISR--KWLNNWVPP 330
R T + +W V P
Sbjct: 704 ERLSRPGTNFYKLMRWQLGKVEP 726
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 DEATANVDPNTDALIQKSIRKHF--ADCTVVTVAHRLHTVADSDRVVVMEAGQIVD 255
DEAT+ +D NT+ + ++I + T V +AHRL T+ D D + V+E G++V+
Sbjct: 604 DEATSALDTNTERALLRNINDLIKGSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVE 659
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +1
Query: 19 NFSAGKXXXXXXXXXXXXXXXXXXXDEATANVDPNTDALIQKSIRKHFADCTVVTVAHRL 198
NFS G+ DE T+ +D + L++K+I+ CTV+ + H+
Sbjct: 1235 NFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQN--LSCTVLIITHQP 1292
Query: 199 HTVADSDRVVVMEAG 243
+ +DR++VM++G
Sbjct: 1293 SLMKLADRIIVMDSG 1307
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 94 DEATANVDPNTDALIQKSIRKHFADCTVVTVAHRLHTVADSDRVVVMEAGQIV 252
DE T+ +DP T L+ +IR H T + + H + + + + V+V++ G ++
Sbjct: 595 DEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLI 647
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 173 VQSAKCLRIDFWISASVFGSTLAVAS 96
+QS KCL+I +S +FG T AS
Sbjct: 1085 IQSQKCLQIAVDLSDKIFGKTTPTAS 1110
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 205 VADSDRVVVMEAGQIVDVATLTSYLRTITGISRKWLNNWV 324
V SD V+ +GQ + + TS+ I+ + WL +WV
Sbjct: 108 VLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWV 147
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 129 CTDPEVYSQTFCGLHRCHSRPSTTH 203
C DP +++ FC ++ CHS + ++
Sbjct: 641 CVDPSIHNTLFC-IYACHSSSNESY 664
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 8.8
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -1
Query: 269 VRVATSTIWPASMTTTRSESA----TVCSRWATVTTVQSAKCLRIDFWISASVFGSTLAV 102
V A S+ AS+T S S T S A V + SA S+SV S+ V
Sbjct: 81 VTPAASSSVAASVTPVASSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEV 140
Query: 101 ASSNTSS 81
ASS TSS
Sbjct: 141 ASSTTSS 147
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 594 RFYVRCT*CVT*ILMVLNSLVQDY 665
RFY+RCT C I + + DY
Sbjct: 79 RFYIRCTRCAAEITFITDPKHADY 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,185
Number of Sequences: 5004
Number of extensions: 56532
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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