Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1518
(752 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 1.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.4
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 9.4
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 260 ATSTIWPASMTTTRSESATVCSRWATVTTVQSAKCLR 150
A+ST PA++TTT + + T + A T + ++
Sbjct: 98 ASSTSLPATITTTTTTTTTTTATAAATATTTATGLIK 134
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 354 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 395
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 422 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 463
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 638 HQNLSNTLSTSYIKPAFDSPVVK*LFELIDTTTECRLPLFGLK 510
H+N + + YI+ AF +P+ ++ T+ LPL G++
Sbjct: 422 HKNSAANPPSGYIRSAFGTPISTGRPATVEDTS-ASLPLSGMQ 463
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 9.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 689 AGQPSSRYTWVLKDYKYP 742
AG P+ + TW L + P
Sbjct: 446 AGNPTPQVTWALDGFALP 463
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 9.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 689 AGQPSSRYTWVLKDYKYP 742
AG P+ + TW L + P
Sbjct: 446 AGNPTPQVTWALDGFALP 463
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/38 (21%), Positives = 17/38 (44%)
Frame = -1
Query: 731 NLLKPKCISNLAAQLWQCINLKVILYQRIKYHQNLSNT 618
N+L P N+ + W C + +Y +++ + T
Sbjct: 363 NILSPSIHDNICSNGWICEHRWRQIYNMVRFRNLVKGT 400
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,311
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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