Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1517
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   7.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.4  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 250 FVVRNNLGPFIQFFVALFVNLFLYPFIATQWVPF-SELCVLSFFLMFLTL-CS 402
           F+V +    F+ F +   V     PF   Q  PF S LC LSFF + L L CS
Sbjct: 4   FLVFSACEVFVGFSLCTLV--ISVPFFFLQMTPFYSILCFLSFFALLLHLPCS 54


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 349 FSELCVLSFFLMFLTLCSFGAN 414
           F +L   S F+ FL +CSFG+N
Sbjct: 517 FVKLDYFSIFITFLHVCSFGSN 538


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 259 RNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFL 390
           + NLG  ++FF+   + LF+  +++++   F+ LC+ SF   F+
Sbjct: 47  KGNLGFLVEFFIFCLIPLFVI-YVSSKVGVFT-LCIASFLPSFV 88


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 294 HKELNERTQIVAYNKFSDSSGCKLPSLYLKKRPDH 190
           H   NER   V Y     + G  L SL+L +  DH
Sbjct: 272 HPSSNERNYHVFYQLLRGADGSLLESLFLDRYVDH 306


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 274 PFIQFFVALFVNLFLYPFIATQWVPFSELCVLSF-FLMFLTLCSF 405
           P      ALF N+  +   ++  VPFS   +L F +L+F    SF
Sbjct: 408 PGFMLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSF 452


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 DGNLQPDESENLLYATIWVRSFSSLWRCL 304
           DGN+   + +      +W+ SF++L+ CL
Sbjct: 40  DGNVTDPKLKRKFMLQVWIGSFTALFICL 68


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 313 FLYPFIATQWVPFSELCVLSFFLMFLTLCSF 405
           FL+PF  ++   F  L +  FFL+F    SF
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSF 131


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 632 HQHQNDRYQXRKEHS 588
           H  ++DRY+ R+EHS
Sbjct: 174 HSKRDDRYERRREHS 188


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 223 TVAVPQEETGPLTKIDKLSFRMQHFERANHHGDETDVVKD*R 98
           T A  +EE GPLT   + + R    E AN    E  V K  R
Sbjct: 173 TTAHAEEEKGPLTPDSEYAARQLTEELANKSSQEEGVDKQLR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,957
Number of Sequences: 5004
Number of extensions: 55673
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)