Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1517
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0261 + 24007790-24009098,24009191-24011118                       30   1.4  
03_06_0776 - 36176390-36177589                                         30   1.4  
05_04_0137 + 18343106-18344686                                         28   7.4  
03_05_1069 + 30118930-30120120                                         28   7.4  

>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 186 VSGPVSS*GTATVICNQTSLRICCTQQSGSVHSVLCGVVCEFIFISLYSNTM 341
           ++GP++S        N   L++CC   SG V + L  +     FISL SN +
Sbjct: 435 LTGPITSINRKGAFLNLEILQLCCNSLSGPVPAFLFSLP-RLEFISLMSNNL 485


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +1

Query: 268 LGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPYPDVLALI 447
           + P +  F+ L + L L+P +A   +  + + +L+ FL+ L L     N N  PD L   
Sbjct: 1   MAPRLLCFLFLLLQLLLFPRVAAIVLAATPVLLLAAFLLALVLVYSEPNNNNEPDHL--- 57

Query: 448 SFAINVLAKYPYEKD 492
              I + ++ P+  D
Sbjct: 58  -IPIRIRSRNPHAHD 71


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 540 YPSYVLGNSIEFCLNGRMFF 599
           +P+ VLGN++EF  N R FF
Sbjct: 40  HPNPVLGNTVEFIRNRRRFF 59


>03_05_1069 + 30118930-30120120
          Length = 396

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = +2

Query: 173 FIDFRK-WSGLFLRYSDGN--LQP-DESENLLYATIWVRSFSSLWR 298
           +++ RK  + L++R+SD    L P D ++ LLY+  W R+F  +WR
Sbjct: 118 YVEVRKNRTALWIRHSDAVSCLSPTDSAQGLLYSGSWDRTF-KVWR 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,081
Number of Sequences: 37544
Number of extensions: 327593
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)