Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1517
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   32   0.46 
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)           27   9.9  
SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)                  27   9.9  

>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 265 NLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFF 378
           ++ P+I FF+ L + + ++P     W+P SEL +++ F
Sbjct: 405 SIRPYISFFICLLITVAVFPLCDKSWIPCSELSLVALF 442


>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
 Frame = +1

Query: 352 SELCVLSFFLMFLTLCSFGANGNPYPD-----VLALISFAINVLAK-YPYEKDTVVHQGG 513
           SE  ++ +F M + +    A  NPYP      +L LISF     A    Y   T +H   
Sbjct: 218 SETFLIDYFFMSIVITKIVAQANPYPKRCELYILCLISFVNRACASAMGYRPPTAIHATL 277

Query: 514 DF*IFTYRIIRLMSSG 561
            F    Y   R   SG
Sbjct: 278 SFVDILYLTKRYFPSG 293


>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
          Length = 642

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 334 TQWVPFSELCVLSFFLMFLTLCSFGAN 414
           T  +PF +    +  ++F TL SFGAN
Sbjct: 114 TGLLPFPDFVAFAIVMIFTTLASFGAN 140


>SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)
          Length = 410

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 647 IASARHQHQNDRYQXRKEHSTVQTKLYAIP 558
           + S++H+ Q D+ + + EH T Q K  A+P
Sbjct: 255 LLSSQHRDQLDKLRVQIEHQTAQMKHVALP 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,786,035
Number of Sequences: 59808
Number of extensions: 419345
Number of successful extensions: 884
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)