Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1517
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y18064-1|CAA77022.1|  890|Homo sapiens wolframin protein.              40   0.010
BC030130-1|AAH30130.1|  890|Homo sapiens WFS1 protein protein.         40   0.010
AF084481-1|AAC64943.1|  890|Homo sapiens transmembrane protein p...    40   0.010
AK128197-1|BAC87320.1|  161|Homo sapiens protein ( Homo sapiens ...    33   0.66 
AF231922-1|AAF72946.1|  247|Homo sapiens C21orf62 protein protein.     32   1.5  

>Y18064-1|CAA77022.1|  890|Homo sapiens wolframin protein.
          Length = 890

 Score = 39.5 bits (88), Expect = 0.010
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 262 NNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPY 426
           N+L P+  F +++F  +F +P  +   +P SEL V++ F    +  S   +  PY
Sbjct: 400 NHLEPYAHFLLSVFFVIFSFPIASKDCIPCSELAVITGFFTVTSYLSLSTHAEPY 454



 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 119 SFVAMVICTFKMLHAKRQFIDFRKWSGLFLRYSDGNLQPDESE 247
           SF++MVICT K+    + + +FR  + L LR+ + NL  +++E
Sbjct: 353 SFISMVICTLKVFQDSKAWENFRTLTDLLLRF-EPNLDVEQAE 394


>BC030130-1|AAH30130.1|  890|Homo sapiens WFS1 protein protein.
          Length = 890

 Score = 39.5 bits (88), Expect = 0.010
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 262 NNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPY 426
           N+L P+  F +++F  +F +P  +   +P SEL V++ F    +  S   +  PY
Sbjct: 400 NHLEPYAHFLLSVFFVIFSFPIASKDCIPCSELAVITGFFTVTSYLSLSTHAEPY 454



 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 119 SFVAMVICTFKMLHAKRQFIDFRKWSGLFLRYSDGNLQPDESE 247
           SF++MVICT K+    + + +FR  + L LR+ + NL  +++E
Sbjct: 353 SFISMVICTLKVFQDSKAWENFRTLTDLLLRF-EPNLDVEQAE 394


>AF084481-1|AAC64943.1|  890|Homo sapiens transmembrane protein
           protein.
          Length = 890

 Score = 39.5 bits (88), Expect = 0.010
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 262 NNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPY 426
           N+L P+  F +++F  +F +P  +   +P SEL V++ F    +  S   +  PY
Sbjct: 400 NHLEPYAHFLLSVFFVIFSFPIASKDCIPCSELAVITGFFTVTSYLSLSTHAEPY 454



 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 119 SFVAMVICTFKMLHAKRQFIDFRKWSGLFLRYSDGNLQPDESE 247
           SF++MVICT K+    + + +FR  + L LR+ + NL  +++E
Sbjct: 353 SFISMVICTLKVFQDSKAWENFRTLTDLLLRF-EPNLDVEQAE 394


>AK128197-1|BAC87320.1|  161|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46325 fis, clone TESTI4043371. ).
          Length = 161

 Score = 33.5 bits (73), Expect = 0.66
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 274 PFIQFFVALFV--NLFLYPFIATQWVPFSELCVLSFFLMF-LTLCSFGANG 417
           PF+ FF++ F   + FL+ F+ + +  F     LSFFL F ++LC  G +G
Sbjct: 86  PFLSFFLSFFFFPSFFLFSFLLSLFPSFFLSLSLSFFLFFRVSLCHPGWSG 136


>AF231922-1|AAF72946.1|  247|Homo sapiens C21orf62 protein protein.
          Length = 247

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 388 LTLCSFGANGNPYPDVLALISFAINVLAKYPY-EKDTVVHQGGD 516
           L+LCS       Y  +  L    IN+ AK+P+ E+  ++H GGD
Sbjct: 104 LSLCSTNTLPTEYLAICGLKRLRINMEAKHPFPEQSLLIHSGGD 147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,217,469
Number of Sequences: 237096
Number of extensions: 1881004
Number of successful extensions: 7897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7897
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)