Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1517
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB...    93   3e-19
AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA...    93   3e-19
AY119144-1|AAM51004.1|  511|Drosophila melanogaster RE48727p pro...    86   4e-17
BT006026-1|AAO85560.1|  833|Drosophila melanogaster RE14149p pro...    28   9.5  
BT001496-1|AAN71251.1| 1078|Drosophila melanogaster LD32685p pro...    28   9.5  
AF181650-1|AAD55436.1| 1078|Drosophila melanogaster BcDNA.LD2291...    28   9.5  
AE014297-4360|AAN14167.1| 1078|Drosophila melanogaster CG15817-P...    28   9.5  
AE014297-4359|AAF56881.1| 1084|Drosophila melanogaster CG15817-P...    28   9.5  

>AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB,
           isoform B protein.
          Length = 872

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 VRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLC-SFGANGNPYPD 432
           +RNN+ P++ FF A   NL +YP +   W+P SEL ++S  L F+T+C S  A+ +  PD
Sbjct: 358 LRNNMKPYLYFFCAFICNLIVYPLVTDAWLPHSELTIISGALTFITMCVSMYASSHQLPD 417

Query: 433 VLALISFAINVLAKYPYEKDTVV 501
            L ++SFA+NVLAKYPYE D VV
Sbjct: 418 WLVIVSFAVNVLAKYPYEMDEVV 440



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +3

Query: 510 WRFLDFHISNYPSYVLGNSIEFCLNGRMFFSXLIPVILVLMARRS 644
           WRFLD  +  + S+V+GN IEFCLN R      IPV+L++MA+RS
Sbjct: 444 WRFLDLRVPTFSSFVIGNGIEFCLNCRTALYLFIPVLLIMMAKRS 488



 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 131 MVICTFKMLHAKRQFIDFRKWSGLFLRYSDGNLQPDESEN 250
           M+  T KML  K+QF+DFR WSGLFL Y D N++ D +E+
Sbjct: 316 MIWATCKMLKTKQQFVDFRIWSGLFLSYGDQNIEADIAEH 355


>AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA,
           isoform A protein.
          Length = 853

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 VRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLC-SFGANGNPYPD 432
           +RNN+ P++ FF A   NL +YP +   W+P SEL ++S  L F+T+C S  A+ +  PD
Sbjct: 339 LRNNMKPYLYFFCAFICNLIVYPLVTDAWLPHSELTIISGALTFITMCVSMYASSHQLPD 398

Query: 433 VLALISFAINVLAKYPYEKDTVV 501
            L ++SFA+NVLAKYPYE D VV
Sbjct: 399 WLVIVSFAVNVLAKYPYEMDEVV 421



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +3

Query: 510 WRFLDFHISNYPSYVLGNSIEFCLNGRMFFSXLIPVILVLMARRS 644
           WRFLD  +  + S+V+GN IEFCLN R      IPV+L++MA+RS
Sbjct: 425 WRFLDLRVPTFSSFVIGNGIEFCLNCRTALYLFIPVLLIMMAKRS 469



 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 131 MVICTFKMLHAKRQFIDFRKWSGLFLRYSDGNLQPDESEN 250
           M+  T KML  K+QF+DFR WSGLFL Y D N++ D +E+
Sbjct: 297 MIWATCKMLKTKQQFVDFRIWSGLFLSYGDQNIEADIAEH 336


>AY119144-1|AAM51004.1|  511|Drosophila melanogaster RE48727p
           protein.
          Length = 511

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
 Frame = +1

Query: 274 PFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLC-SFGANGNPYPDVLALIS 450
           P++ FF A   NL +YP +   W+P SEL ++S  L F+T+C S  A+ +  PD L ++S
Sbjct: 3   PYLYFFCAFICNLIVYPLVTDAWLPHSELTIISGALTFITMCVSMYASSHQLPDWLVIVS 62

Query: 451 FAINVLAKYPYEKDTVV 501
           FA+NVLAKYPYE D VV
Sbjct: 63  FAVNVLAKYPYEMDEVV 79



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +3

Query: 510 WRFLDFHISNYPSYVLGNSIEFCLNGRMFFSXLIPVILVLMARRS 644
           WRFLD  +  + S+V+GN IEFCLN R      IPV+L++MA+RS
Sbjct: 83  WRFLDLRVPTFSSFVIGNGIEFCLNCRTALYLFIPVLLIMMAKRS 127


>BT006026-1|AAO85560.1|  833|Drosophila melanogaster RE14149p
           protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 247 EFVVRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNP 423
           EF+ +  L   + F++ L + +    F AT   P+SE C  S  + F+ +  F     P
Sbjct: 568 EFIPQLVLLLLLFFYMVLLMFIKWIKFAATNDKPYSEACAPSILITFIDMVLFNTPKPP 626


>BT001496-1|AAN71251.1| 1078|Drosophila melanogaster LD32685p
           protein.
          Length = 1078

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 231 NQTSLRICCTQQSGSVHSVLC 293
           N  ++R+CCTQQ+ S +S  C
Sbjct: 930 NCCAMRLCCTQQTSSSNSTSC 950


>AF181650-1|AAD55436.1| 1078|Drosophila melanogaster BcDNA.LD22910
           protein.
          Length = 1078

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 231 NQTSLRICCTQQSGSVHSVLC 293
           N  ++R+CCTQQ+ S +S  C
Sbjct: 930 NCCAMRLCCTQQTSSSNSTSC 950


>AE014297-4360|AAN14167.1| 1078|Drosophila melanogaster CG15817-PA,
           isoform A protein.
          Length = 1078

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 231 NQTSLRICCTQQSGSVHSVLC 293
           N  ++R+CCTQQ+ S +S  C
Sbjct: 930 NCCAMRLCCTQQTSSSNSTSC 950


>AE014297-4359|AAF56881.1| 1084|Drosophila melanogaster CG15817-PB,
           isoform B protein.
          Length = 1084

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 231 NQTSLRICCTQQSGSVHSVLC 293
           N  ++R+CCTQQ+ S +S  C
Sbjct: 936 NCCAMRLCCTQQTSSSNSTSC 956


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,221,395
Number of Sequences: 53049
Number of extensions: 588646
Number of successful extensions: 1394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)