Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1516
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 33 0.033
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 31 0.13
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.13
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.17
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 0.53
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 29 0.70
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 29 0.93
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.6
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 2.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.1
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 3.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 27 3.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.0
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 5.0
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 5.0
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 6.6
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.7
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 517 NFDVMKTENEDLQRKTKLLEEVTFS----LKQKSFELDQVQTDLNSLRRRHSSLQEEAEA 684
N D+ KTE E L RK +LLEE + L++ + ++ Q RR SL+ E +
Sbjct: 73 NEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDD 132
Query: 685 LRVLTDQL 708
+ +++
Sbjct: 133 MEQKLEEM 140
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 520 FDVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEA----L 687
++ + ++E + + + LEE T L+ K+ D +T+ L R+ L+EE E L
Sbjct: 43 YESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLL 102
Query: 688 RVLTDQLKK 714
R T+++++
Sbjct: 103 RETTEKMRQ 111
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 517 NFDVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNS 642
N +++K E DL+ K EE + E +++QT+LNS
Sbjct: 266 NVEILKEEKNDLESKLYRFEEYRDKVATLELENEKIQTELNS 307
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 529 MKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEALR 690
+ EN DL+ K LEE SL +K ++D ++ ++ +L+ L++ EALR
Sbjct: 656 LSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLK---EDLRKSEEALR 706
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 523 DVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEALRVLTD 702
D +N L K +E + SL KSFEL L +L++ HS E ++
Sbjct: 1449 DDTSRKNSSLMEK---IESINSSLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQ 1505
Query: 703 QLKK 714
+ K+
Sbjct: 1506 EAKE 1509
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 529 MKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEAL-RVLTDQ 705
+K + + L ++ +L E+V LK+K + ++ L++ R++ SSL + L +L D
Sbjct: 1395 LKNQLDHLNQEIRLKEDV---LKEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDDT 1451
Query: 706 LKKCLNMTTKI 738
+K ++ KI
Sbjct: 1452 SRKNSSLMEKI 1462
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 571 LEEVTFSLKQKSFEL-DQVQTDLNSLRRRHSSLQEEAEALRVLTDQLKK 714
L++V S++ ++ EL D+V ++ +RRR + + L+ L QL++
Sbjct: 1672 LQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQLEE 1720
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.1 bits (67), Expect = 0.17
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 520 FDVMKTENEDLQR-KTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEALRVL 696
FD + TEN+ L+R ++L E+ + +Q S DQ++ N +Q +AL +
Sbjct: 114 FDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQALSDI 173
Query: 697 TDQLKK 714
++ K+
Sbjct: 174 EERKKQ 179
Score = 29.5 bits (63), Expect = 0.53
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 574 EEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEE----AEALRVLTDQLKKCLN 723
E + +L+ ++ D + T+ SLRR +S LQE+ +E L + DQ++ N
Sbjct: 101 ESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQN 154
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 341 LLEKHKKMKSEFTDLKDKHLEVSDEYEKIKETFQSCSNERD 463
L+EK+ K E DL ++ L +YEK+ E QS S R+
Sbjct: 334 LIEKYASQKEELMDLNERLLVARRDYEKLYE--QSMSEMRN 372
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 29.1 bits (62), Expect = 0.70
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 266 VTKVEKRSTVAPKIPPYDFKARFNDLLE-KHKKMKSEFTDLKDKHLEVSDEYEKIKETFQ 442
+ V S++ P P D R +L +H+K++ DL K + EY +E +
Sbjct: 884 IVSVVGMSSMQP--PIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWMR 941
Query: 443 SCSNERDILKAN 478
C D+LKA+
Sbjct: 942 ICFELIDMLKAH 953
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 28.7 bits (61), Expect = 0.93
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 317 DFKARFNDLLEKHKKMKSEFTDLKD 391
DFK+RF+ E H K+ +E ++KD
Sbjct: 116 DFKSRFSQYRESHLKLLNELQNVKD 140
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 365 KSEFTDLKDKHLEVSDEYEKIKET 436
KS F+ ++ HL++ +E + +K+T
Sbjct: 118 KSRFSQYRESHLKLLNELQNVKDT 141
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 544 EDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEALR 690
ED+ + + LEE L+ K L ++ D NSLR SSL + E+LR
Sbjct: 424 EDIMLQFRSLEEERDVLESK---LQTLEDDNNSLRLMTSSLGNQIESLR 469
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 278 EKRSTVAPKIPPYDFKARFNDLLEKHKKMKSEFTDLKDKHLEVSDEYEK 424
+K TV + +++KA + + + MK DL+ + +V D YE+
Sbjct: 42 QKTKTVEAQKDDFEYKAMISAQINEMALMKQTVMDLEMQQSKVKDRYEE 90
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Frame = +1
Query: 508 IKVNFDVMKTENEDLQRKTKLLEEVTFSLK----QKSFELDQVQTDLNSLRRRHSSLQEE 675
I+ +F K +NE+LQR++ L+++ L+ +K+ +++ + ++ N L+ + SL+E+
Sbjct: 892 IEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLLSEQNELKEK-LSLEEK 950
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 54 KLPTISKENRFGQFHNRPISRTIANGLSDVDKKNLITNHTRPLRNGPPVSAAAPRIKRSA 233
+LP +S+ N QF +R + T N LSD+ I + P + A R
Sbjct: 99 ELPQVSRLNGASQFPSREPASTAINKLSDLQPMASIWENIVPEKPAIIPPEVASLQDRLG 158
Query: 234 TAPSSTTFRIM*QKLKKDQL 293
PS F + Q+L++ L
Sbjct: 159 AQPSEKVFSL--QELEEQLL 176
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 332 FNDLLEKHKKMKSEFTDLKDKHLEVSDEYEKIKETFQSCSNE 457
F+DL+ + + E ++L + L V + K+K + S NE
Sbjct: 68 FSDLIWTNGSIIKELSELSSQTLSVQSQLLKVKNSIDSYKNE 109
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 508 IKVNFDVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEAL 687
I++ ++ E+ DLQ+ +E+ L+ K LD+V + + H S+ ++ ++
Sbjct: 318 IELKNTALEEEHGDLQQIRGKAKELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQ 377
Query: 688 RVLTDQLKKCLNMT 729
L L L+ T
Sbjct: 378 EELISSLTTGLSTT 391
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 323 KARFNDLLEKHKKMKSEFTDLKDKHLEVSDEYEKIKETFQSCSNERDILKANL 481
+ARF + + +K+ F +++ H ++S +K + CS+ D L+AN+
Sbjct: 68 EARFRNQSQTEDLLKNFFPEIQTIHKKISQVQSLLKIIEKKCSS--DFLEANV 118
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 347 EKHKKMKSEFTDLKDKHLEVSDEYEKIKETFQS 445
E+ K + DLK+KH ++ +++ + E F++
Sbjct: 563 EELGKTLKQLNDLKEKHAQLQTKWKSVSEMFRN 595
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 251 NIPNNVTKVEKRSTVAPKIPPYDFKARFNDLLEKHKKMKSEFTDLK 388
NI + K+E ST + P +++ D +E K++S ++LK
Sbjct: 265 NILQEILKIESTSTTSQIKPKCNYETEITDCME---KLQSNLSELK 307
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 419 EKIKETFQSCSNERDILKANLSVKTLE 499
+++KE CS R ILK N S LE
Sbjct: 168 QELKEVLSWCSEHRAILKKNNSTLELE 194
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +1
Query: 508 IKVNFDVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEAL 687
IK F ++ ++N DL + + + + SL + +++ DLN L + + + E+
Sbjct: 717 IKNQFGIISSKNRDLLSELEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESF 776
Query: 688 R 690
+
Sbjct: 777 K 777
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = +1
Query: 541 NEDLQRKTKLLEEVT----FSLKQKSFELDQVQ 627
NE + + TK+LEEV+ +SLK++ F VQ
Sbjct: 606 NETIDQLTKMLEEVSDQLRYSLKERDFFRSLVQ 638
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 538 ENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLN-SLRRRHSSLQEEAEALRVLTDQLKK 714
+ + +Q LEE L+ + ++ +T +LRR +LQEE E ++ L K
Sbjct: 2016 DKKRIQSSVSRLEERNAQLRNQLEDVQASETQWKFALRRTEHALQEERERVKSLETDFDK 2075
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,963
Number of Sequences: 5004
Number of extensions: 46521
Number of successful extensions: 225
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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