Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1516
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.57 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   4.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.3  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 37  KCPRYQNYQQYQKKIDLDNFII 102
           K   Y NY  Y KK+   N+II
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYII 111


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 25  KLLEKCPRYQNYQQYQKKIDLDNFIIGPYPELLLMV 132
           KL  KC   QN    +K   L    +  +PE+L  V
Sbjct: 94  KLFNKCKSIQNEDPCEKAYQLVKCYVEFHPEVLQTV 129


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 55  NYQQYQKKIDLDNFII 102
           NY  Y KK+   N+II
Sbjct: 337 NYNNYNKKLYYKNYII 352


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 55  NYQQYQKKIDLDNFII 102
           NY  Y KK+   N+II
Sbjct: 332 NYNNYNKKLYYKNYII 347


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 138 DVD-KKNLITNHTRPLRNGPPV-SAAAPRIKRSATA--PSSTTFRIM*QKLKKDQLWLRK 305
           DVD +K+L  N    L  G  +    A R+++  TA  PS+   +I+    KK  +W+  
Sbjct: 61  DVDIRKDLYANTV--LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118

Query: 306 SLL 314
           S+L
Sbjct: 119 SIL 121


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 14  SRSGNY*KNVQDTKTTNNIKRK*IWTIS 97
           S S NY  N+ +    NN  +K  + I+
Sbjct: 84  SLSNNYISNISNYNNNNNYNKKLYYNIN 111


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 14  SRSGNY*KNVQDTKTTNNIKRK*IWTIS 97
           S S NY  N+ +    NN  +K  + I+
Sbjct: 322 SLSNNYISNISNYNNNNNYNKKLYYNIN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,299
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)