Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q648I9 Cluster: Coenzyme F420 hydrogenase beta subunit;...    33   7.5  
UniRef50_A5B9X8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_Q648I9 Cluster: Coenzyme F420 hydrogenase beta subunit;
           n=4; environmental samples|Rep: Coenzyme F420
           hydrogenase beta subunit - uncultured archaeon GZfos37D1
          Length = 351

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 708 TPCVMETYNLMFI-GSDNHHMHNY*SYV 788
           TPC M +Y  MF+ G D H+ HN+ S++
Sbjct: 173 TPCGMASYEKMFVVGKDTHNAHNFSSHI 200


>UniRef50_A5B9X8 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 356

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 14/34 (41%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
 Frame = -2

Query: 707 KFELCRQLLRRNRLTGESYT-RYPTSSMIDIKIQ 609
           +F + R+LLR +R+ G+SY+ R+  SSM+ +K++
Sbjct: 188 QFSIARRLLRDSRMPGKSYSPRFKLSSMLXLKLE 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,596,773
Number of Sequences: 1657284
Number of extensions: 15611628
Number of successful extensions: 29601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29599
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)