Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   2.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   2.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   2.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   6.3  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   8.4  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 372 TFSHYYLLSNSGSLSQMIILFSLNMHIL 289
           TFSHYY+ +N  S+S     F L+  I+
Sbjct: 653 TFSHYYMSANPDSMSSKDAAFVLSYSII 680


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 783  YVHRAFINYLIKLLILCFISLIWYLYNI 866
            ++   +IN +I +++L   SL W+L+NI
Sbjct: 1436 FIEMQYIN-IISIIVLVLTSLAWFLFNI 1462


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 470 NRLPSFWGQCNVSSSSIQVYHTL*HSPWHFIPPPSHITIY 351
           N   S WG      + + VY+TL HS   F+   S++T Y
Sbjct: 5   NPAQSHWGVPKGQRTELYVYNTLTHSKVPFVSNGSNLTWY 44


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 688 CLHNSNLHLVSWKHII*CLSALITTICTTTEVMSIGP 798
           C H  +  LV+WK    C++    ++    E+ + GP
Sbjct: 70  CTHGRDCRLVTWKIDFNCMTDNFMSLSKLAELQNYGP 106


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 806 INKGPMDITSVVVHMVVIRADKH*II---CFHDTRCKFELCRQLLRRNRL 666
           +N+ P D+  V+   V  +A    ++   C  DTR KF +C   L+RN L
Sbjct: 40  LNERP-DLPPVLYEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,173
Number of Sequences: 5004
Number of extensions: 72763
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)