Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788     29   3.8  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    28   8.8  

>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
          Length = 1130

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 687 LSTQFKLTPCVMETYNLMFIGSDNH----HMHNY*SYVHRAF 800
           +S++  +T C+ E  N   I SDNH    H H + +++   F
Sbjct: 342 ISSKVSVTSCINELMNAHVINSDNHLPPVHSHEFINWIENLF 383


>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
            27071569-27071676,27071796-27071855,27072368-27072443,
            27072550-27072710,27076919-27076981,27077061-27077148,
            27077568-27078308,27078406-27079033,27079314-27079368,
            27082073-27083527
          Length = 1425

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 701  ELCRQLLRRNRLTGESYTRYPTSSMIDIKI 612
            +LC+++L  NRL   +  RY  S M+D K+
Sbjct: 986  QLCQEILLLNRLQHPNIVRYYGSEMVDDKL 1015


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,247
Number of Sequences: 37544
Number of extensions: 400856
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)